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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_18690 and AO356_18695 are separated by 446 nucleotides
AO356_18695 and AO356_18700 are separated by 769 nucleotides
AO356_18700 and AO356_18705 are separated by 90 nucleotides
AO356_18705 and AO356_18710 overlap by 4 nucleotides
AO356_18690: AO356_18690 - hypothetical protein, at 4,198,602 to 4,198,865
_18690
AO356_18695: AO356_18695 - Acetyl-coenzyme A synthetase (EC 6.2.1.1)
(from data)
, at 4,199,312 to 4,201,267
_18695
AO356_18700: AO356_18700 - L-Arginine ABC transporter, periplasmic substrate-binding component
(from data)
, at 4,202,037 to 4,202,810
_18700
AO356_18705: AO356_18705 - L-Arginine ABC transporter, permease component 2
(from data)
, at 4,202,901 to 4,203,590
_18705
AO356_18710: AO356_18710 - L-Arginine ABC transporter, permease component 1
(from data)
, at 4,203,587 to 4,204,285
_18710
Group
Condition
AO356
_18690
AO356
_18695
AO356
_18700
AO356
_18705
AO356
_18710
carbon source
L-Arginine (C)
-0.2
-0.0
-4.0
-4.8
-5.1
carbon source
L-Arginine (C)
-0.1
-0.0
-4.0
-4.3
-5.6
carbon source
acetate (C)
-1.0
-4.5
-0.4
+0.1
-0.0
carbon source
acetate (C)
-1.0
-4.5
-0.3
+0.0
+0.0
stress
Paraquat dichloride 0.0625 mg/ml
-0.0
-0.0
-0.6
-1.0
-0.5
stress
sodium fluoride 6.25 mM
+0.0
+0.1
-0.5
-0.8
-0.7
stress
Lomefloxacin 0.0005 mM
+0.0
+0.2
-0.5
-0.7
-0.6
stress
Paraquat dichloride 0.0625 mg/ml
-0.2
+0.0
-0.5
-0.5
-0.4
stress
Benzalkonium Chloride 0.016 mg/ml
+0.2
+0.0
-0.5
-0.6
-0.6
motility
outer cut, LB soft agar motility assay
-0.1
+0.1
-0.3
-0.5
-0.5
stress
Thallium(I) acetate 0.008 mg/ml
+0.4
+0.0
-0.2
-0.5
-0.5
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.2
-0.1
-0.7
+0.2
-0.3
carbon source
Ethanol (C)
-0.1
-1.6
+0.3
+0.3
+0.4
stress
Cholin acetate 40 mM
+0.5
-0.2
-0.3
-0.2
-0.4
carbon source
Ethanol (C)
+0.2
-1.9
+0.2
+0.5
+0.3
stress
copper (II) chloride 2.5 mM
-0.8
-0.0
+0.2
-0.1
+0.2
stress
acetate 40 mM
+0.6
-0.1
-0.2
-0.2
-0.3
carbon source
Cytidine (C)
-0.0
-0.6
-0.1
+0.5
+0.3
carbon source
Carbon source Sucrose 10 mM
+0.2
-0.7
+0.2
+0.2
+0.3
carbon source
Carbon source Sucrose 2.5 mM
+0.1
-0.6
+0.1
+0.4
+0.3
carbon source
L-Isoleucine (C)
+0.1
-0.7
+0.3
+0.7
+0.5
stress
KB-half, Pseudo5 supernatant
+0.3
-0.0
+0.4
-0.3
+0.4
carbon source
L-Asparagine (C)
+0.1
+0.1
+0.4
+0.4
+0.5
carbon source
L-Alanine (C)
+0.2
+0.0
+0.2
+0.5
+0.6
nitrogen source
L-Isoleucine (N)
+0.2
-0.0
+0.4
+0.6
+0.3
carbon source
D-Alanine (C)
+0.3
+0.1
+0.2
+0.6
+0.5
carbon source
L-Histidine (C)
+0.2
-0.4
+0.8
+0.6
+0.5
carbon source
L-Histidine (C)
+0.1
-0.3
+0.9
+1.0
+0.8
carbon source
L-Lysine (C)
+0.3
-0.5
+5.3
+4.4
+4.4
carbon source
L-Lysine (C)
+0.3
-0.4
+5.4
+4.4
+4.4
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