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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_18435 and AO356_18440 are separated by 221 nucleotides
AO356_18440 and AO356_18445 are separated by 13 nucleotides
AO356_18445 and AO356_18450 are separated by 155 nucleotides
AO356_18450 and AO356_18455 are separated by 2 nucleotides
AO356_18435: AO356_18435 - hypothetical protein, at 4,148,843 to 4,149,070
_18435
AO356_18440: AO356_18440 - acriflavine resistance protein B, at 4,149,292 to 4,152,318
_18440
AO356_18445: AO356_18445 - RND transporter, at 4,152,332 to 4,153,480
_18445
AO356_18450: AO356_18450 - outer membrane component of uptake system, probably for ferrous iron
(from data)
, at 4,153,636 to 4,154,733
_18450
AO356_18455: AO356_18455 - imelysin, at 4,154,736 to 4,155,800
_18455
Group
Condition
AO356
_18435
AO356
_18440
AO356
_18445
AO356
_18450
AO356
_18455
stress
Chlorite 0.08 mM
+0.2
+0.1
-0.0
-1.8
-2.2
stress
Lomefloxacin 0.0005 mM
+0.5
-2.0
-1.8
+0.0
+0.0
stress
Chlorite 0.04 mM
-0.3
+0.1
+0.1
-1.6
-1.4
carbon source
D-Lactate (C)
-0.1
+0.1
+0.2
-0.9
-0.7
stress
Paraquat dichloride 0.0625 mg/ml
-0.5
-0.1
-0.1
-0.5
-0.2
stress
Paraquat dichloride 0.0625 mg/ml
-0.1
-0.2
-0.1
-0.5
-0.4
stress
Benzalkonium Chloride 0.016 mg/ml
-0.2
-0.7
-0.6
+0.1
+0.1
nitrogen source
D-Serine (N)
-1.0
-0.0
-0.3
+0.1
+0.1
stress
Nickel (II) chloride 0.625 mM
-0.5
+0.0
+0.2
-0.5
-0.4
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.9
+0.1
+0.0
-0.1
-0.2
carbon source
D-Lactate (C)
+0.1
+0.1
-0.0
-0.6
-0.6
stress
Aluminum chloride 5 mM
-0.1
+0.1
-0.3
-0.1
-0.6
carbon source
acetate (C)
-0.2
+0.1
+0.1
-0.3
-0.6
carbon source
L-Lactate (C)
-0.3
+0.1
+0.2
-0.3
-0.4
carbon source
D,L-Lactate (C)
-0.2
-0.0
+0.3
-0.4
-0.2
stress
Benzethonium chloride 0.025 mM
+0.3
-0.5
-0.4
-0.0
+0.1
stress
perchlorate 75 mM
+0.5
-0.2
-0.1
-0.4
-0.1
stress
Spectinomycin 0.025 mg/ml
+0.4
-0.2
-0.1
-0.4
-0.2
carbon source
L-Histidine (C)
+0.4
-0.3
-0.4
+0.1
+0.3
stress
copper (II) chloride 2.5 mM
+0.6
+0.2
-0.2
-0.2
-0.1
stress
Nickel (II) chloride 0.625 mM
+0.9
+0.0
+0.0
-0.3
-0.0
stress
methylglyoxal 0.016 vol%
+0.9
-0.1
+0.2
-0.2
-0.3
stress
Nalidixic 0.004 mg/ml
+0.6
-0.1
+0.1
-0.2
+0.2
nitrogen source
Uridine (N)
+0.2
+0.2
+0.3
-0.2
+0.1
carbon source
L-Histidine (C)
+0.5
-0.2
-0.2
+0.3
+0.2
motility
outer cut, LB soft agar motility assay
+0.6
+0.1
-0.0
-0.3
+0.5
nitrogen source
Adenosine (N)
+0.9
+0.0
+0.1
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
+1.0
-0.0
-0.1
+0.1
+0.1
stress
D-Cycloserine 0.1 mg/ml
+0.3
+0.0
+0.3
+0.2
+0.4
motility
outer cut, LB soft agar motility assay
+0.6
+0.0
+0.1
+0.2
+0.4
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