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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_18335 and AO356_18340 are separated by 54 nucleotides
AO356_18340 and AO356_18345 are separated by 107 nucleotides
AO356_18345 and AO356_18350 overlap by 4 nucleotides
AO356_18350 and AO356_18355 overlap by 8 nucleotides
AO356_18335: AO356_18335 - LuxR family transcriptional regulator, at 4,130,657 to 4,131,283
_18335
AO356_18340: AO356_18340 - leucyl-tRNA synthetase, at 4,131,338 to 4,131,523
_18340
AO356_18345: AO356_18345 - endonuclease III, at 4,131,631 to 4,132,269
_18345
AO356_18350: AO356_18350 - NADH:quinone oxidoreductase, at 4,132,266 to 4,132,799
_18350
AO356_18355: AO356_18355 - electron transporter RnfG, at 4,132,792 to 4,133,400
_18355
Group
Condition
AO356
_18335
AO356
_18340
AO356
_18345
AO356
_18350
AO356
_18355
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.4
-0.8
-0.7
-0.1
-0.1
stress
Lomefloxacin 0.0005 mM
-0.2
-0.3
-0.4
-0.4
-0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.4
-1.1
+0.4
-0.1
-0.1
stress
Choline chloride 500 mM
-0.2
-0.5
-0.3
-0.1
-0.2
carbon source
Carbon source Sucrose 10 mM
-0.0
-0.4
-0.1
-0.3
-0.4
carbon source
D-Xylose (C)
-0.3
-0.6
-0.2
+0.1
+0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-0.1
-0.5
-0.4
-0.1
+0.1
carbon source
L-Histidine (C)
-0.0
-0.9
+0.1
-0.1
+0.0
motility
outer cut, LB soft agar motility assay
+0.3
-0.6
-0.6
+0.2
-0.1
stress
KB-half, Pseudo5 supernatant
-0.1
-0.4
-0.5
+0.3
-0.1
carbon source
L-Histidine (C)
-0.0
-1.0
+0.1
+0.1
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.1
-0.3
-0.4
-0.2
+0.2
nitrogen source
Gly-Glu (N)
-0.4
+0.3
-0.2
+0.1
-0.4
stress
Cisplatin 0.0032 mg/ml
-0.1
-0.3
-0.2
+0.3
-0.2
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.1
-0.6
+0.4
-0.1
+0.0
stress
Paraquat dichloride 0.0625 mg/ml
-0.1
-0.2
-0.0
+0.7
-0.2
motility
outer cut, LB soft agar motility assay
-0.4
+0.7
-0.0
-0.1
-0.0
anaerobic
Nitrate reduction with yeast extract
-0.0
-0.7
+0.1
+0.2
+0.5
motility
outer cut, LB soft agar motility assay
-0.4
+0.2
-0.2
+0.6
+0.1
motility
outer cut, LB soft agar motility assay
-0.2
+0.6
-0.1
-0.2
-0.0
carbon source
L-Lysine (C)
-0.2
+0.3
+0.7
-0.1
-0.1
stress
Nickel (II) chloride 0.625 mM
-0.1
+0.4
+0.6
-0.1
+0.0
stress
Sisomicin 0.001 mg/ml
+0.1
+0.5
-0.3
+0.1
+0.5
nitrogen source
L-tyrosine (N)
+0.1
+0.7
+0.2
-0.1
+0.1
carbon source
D-Lactate (C)
+0.1
+0.9
+0.0
+0.1
-0.1
stress
Spectinomycin 0.025 mg/ml
-0.0
+0.8
+0.2
+0.0
+0.1
stress
Aluminum chloride 5 mM
+0.1
+0.5
+0.4
+0.1
+0.1
carbon source
D-Lactate (C)
+0.1
+1.0
+0.2
+0.1
-0.2
carbon source
Ethanol (C)
-0.1
+1.3
+0.2
+0.1
-0.1
carbon source
Ethanol (C)
+0.0
+1.3
+0.2
-0.2
+0.1
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