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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_18255 and AO356_18260 are separated by 323 nucleotides
AO356_18260 and AO356_18265 are separated by 115 nucleotides
AO356_18265 and AO356_18270 are separated by 216 nucleotides
AO356_18270 and AO356_18275 overlap by 4 nucleotides
AO356_18255: AO356_18255 - glycerol uptake facilitator GlpF, at 4,114,932 to 4,115,783
_18255
AO356_18260: AO356_18260 - hypothetical protein, at 4,116,107 to 4,116,577
_18260
AO356_18265: AO356_18265 - isomerase, at 4,116,693 to 4,117,484
_18265
AO356_18270: AO356_18270 - iron ABC transporter ATP-binding protein, at 4,117,701 to 4,118,810
_18270
AO356_18275: AO356_18275 - ornithine carbamoyltransferase, at 4,118,807 to 4,119,727
_18275
Group
Condition
AO356
_18255
AO356
_18260
AO356
_18265
AO356
_18270
AO356
_18275
carbon source
Glycerol (C)
-3.7
-0.9
+0.1
+0.1
-4.8
carbon source
Glycerol (C)
-3.8
-0.4
+0.1
-0.0
-4.8
carbon source
Carbon source Sucrose 10 mM
-2.2
-0.2
+0.0
+0.0
-4.7
carbon source
Carbon source Sucrose 5 mM
-2.2
-0.1
-0.1
-0.1
-4.3
pH
Minimal media pH9
-1.1
-0.0
-0.1
-0.3
-5.3
carbon source
Carbon source D-Mannitol 10 mM
-2.0
-0.3
-0.0
-0.2
-4.3
carbon source
Carbon source Sucrose 2.5 mM
-2.1
-0.2
-0.0
+0.2
-4.5
carbon source
Carbon source Sucrose 5 mM
-2.0
+0.5
-0.1
-0.1
-4.8
carbon source
Carbon source D-Mannitol 10 mM
-2.0
+0.0
-0.1
+0.0
-4.4
carbon source
Carbon source Sucrose 2.5 mM
-2.1
-0.0
-0.2
-0.1
-4.0
carbon source
Carbon source D-Mannitol 5 mM
-2.0
-0.1
-0.1
+0.0
-4.1
carbon source
Carbon source D-Glucose 10 mM
-1.6
-0.5
-0.1
+0.1
-3.9
carbon source
Carbon source Sucrose 10 mM
-2.0
-0.1
+0.0
-0.1
-3.8
carbon source
Carbon source D-Mannitol 5 mM
-1.7
+0.1
-0.1
-0.1
-4.1
carbon source
D-Sorbitol (C)
-0.7
-0.1
-0.1
-0.0
-4.9
carbon source
m-Inositol (C)
+0.1
-0.6
-0.0
-0.3
-4.9
carbon source
Carbon source D-Glucose 10 mM
-1.9
+0.2
+0.0
-0.1
-3.8
carbon source
Carbon source D-Mannitol 2.5 mM
-1.8
+0.1
-0.1
+0.1
-3.8
carbon source
L-Proline (C)
+0.1
-0.2
-0.1
+0.1
-5.4
nitrogen source
nitrite (N)
-0.0
+0.2
+0.2
-0.2
-5.5
carbon source
L-Proline (C)
+0.3
-0.3
+0.0
+0.1
-5.3
carbon source
NAG (C)
+0.1
+0.2
-0.0
-0.2
-5.2
nitrogen source
Putrescine (N)
+0.1
+0.2
-0.0
-0.1
-5.3
carbon source
m-Inositol (C)
+0.1
-0.1
+0.1
+0.1
-5.2
carbon source
L-Glutamic (C)
+0.2
+0.0
+0.1
+0.0
-5.3
nitrogen source
Gly-Glu (N)
-0.1
+0.4
+0.1
-0.1
-5.1
carbon source
L-Alanine (C)
+0.4
+0.1
+0.0
+0.0
-5.1
carbon source
D-Alanine (C)
+0.4
+0.2
+0.1
-0.1
-4.9
carbon source
acetate (C)
+1.2
-0.3
+0.1
-0.0
-4.2
carbon source
acetate (C)
+1.4
+0.1
+0.1
-0.0
-4.7
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