Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_17795 and AO356_17800 are separated by 2 nucleotidesAO356_17800 and AO356_17805 overlap by 8 nucleotidesAO356_17805 and AO356_17810 are separated by 1053 nucleotidesAO356_17810 and AO356_17815 are separated by 452 nucleotides AO356_17795: AO356_17795 - hypothetical protein, at 4,013,725 to 4,013,919 _17795 AO356_17800: AO356_17800 - C4-dicarboxylate ABC transporter, at 4,013,922 to 4,015,247 _17800 AO356_17805: AO356_17805 - cytochrome C biogenesis protein CcmE, at 4,015,240 to 4,017,006 _17805 AO356_17810: AO356_17810 - fumarate hydratase, at 4,018,060 to 4,019,583 _17810 AO356_17815: AO356_17815 - hypothetical protein, at 4,020,036 to 4,021,142 _17815
Group Condition AO356_17795 AO356_17800 AO356_17805 AO356_17810 AO356_17815
carbon source a-Ketoglutaric (C) -1.1 -3.4 -3.0 N.D. -0.0
carbon source a-Ketoglutaric (C) -1.1 -2.8 -2.7 N.D. +0.0
carbon source pyruvate (C) -0.2 +0.1 -0.1 N.D. -0.5
pH Minimal media pH6 +0.0 +0.2 -0.2 N.D. -0.6
pH Minimal media pH6 -0.1 +0.2 +0.1 N.D. -0.7
stress acetate 40 mM +0.3 -0.1 +0.1 N.D. -0.6
stress Cholin acetate 40 mM +0.2 -0.1 -0.0 N.D. -0.5
stress Cholin acetate 20 mM +0.2 +0.1 +0.1 N.D. -0.7
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 -0.4 -0.5 +0.6 N.D. +0.4
stress 1-ethyl-3-methylimidazolium acetate 5 mM +0.2 +0.3 +0.1 N.D. -0.5
anaerobic Nitrate reduction with yeast extract -0.1 +0.4 +0.2 N.D. -0.1
nitrogen source L-Phenylalanine (N) +0.3 -0.3 +0.0 N.D. +0.4
stress KB-half, Pseudo5 supernatant -0.1 -0.4 +0.6 N.D. +0.4
motility outer cut, LB soft agar motility assay -0.6 +0.3 -0.1 N.D. +0.8
stress Fusidic 0.1 mg/ml -0.2 +0.2 +0.0 N.D. +0.5
stress Tetracycline 0.0001 mg/ml -0.1 +0.2 +0.0 N.D. +0.6
nitrogen source Inosine (N) +0.1 +0.4 -0.0 N.D. +0.3
stress Spectinomycin 0.0125 mg/ml -0.1 +0.1 -0.0 N.D. +0.9
motility outer cut, LB soft agar motility assay +0.1 +0.1 -0.3 N.D. +1.0
stress Nickel (II) chloride 0.625 mM -0.1 -0.1 -0.1 N.D. +1.1
stress methylglyoxal 0.016 vol% +0.2 +0.2 +0.0 N.D. +0.6
carbon source Fumarate (C) +0.2 +0.8 +0.4 N.D. -0.3
carbon source Fumarate (C) +0.1 +0.7 +0.4 N.D. -0.1
stress Nickel (II) chloride 0.625 mM +0.1 -0.1 -0.2 N.D. +1.3
stress Doxycycline hyclate 0.0001 mg/ml +0.0 -0.1 -0.1 N.D. +1.3
stress Spectinomycin 0.025 mg/ml -0.2 +0.1 +0.1 N.D. +1.2
motility outer cut, LB soft agar motility assay -0.1 +0.4 +0.1 N.D. +0.9
stress Cobalt chloride 0.08 mM -0.1 +0.1 +0.1 N.D. +1.4
stress Cobalt chloride 0.08 mM -0.1 +0.3 -0.0 N.D. +1.3
motility outer cut, LB soft agar motility assay +0.2 +0.3 -0.2 N.D. +1.2
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