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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_17630 and AO356_17635 are separated by 154 nucleotides
AO356_17635 and AO356_17640 are separated by 46 nucleotides
AO356_17640 and AO356_17645 are separated by 59 nucleotides
AO356_17645 and AO356_17650 are separated by 45 nucleotides
AO356_17630: AO356_17630 - pilus assembly protein PapC, at 3,971,281 to 3,973,815
_17630
AO356_17635: AO356_17635 - hypothetical protein, at 3,973,970 to 3,975,214
_17635
AO356_17640: AO356_17640 - hypothetical protein, at 3,975,261 to 3,976,508
_17640
AO356_17645: AO356_17645 - pilus assembly protein, at 3,976,568 to 3,977,311
_17645
AO356_17650: AO356_17650 - adhesin, at 3,977,357 to 3,977,839
_17650
Group
Condition
AO356
_17630
AO356
_17635
AO356
_17640
AO356
_17645
AO356
_17650
stress
perchlorate 75 mM
-0.2
-0.6
-0.6
-0.4
-0.7
anaerobic
Nitrate reduction with yeast extract
-0.2
-0.1
-0.4
-0.1
-0.5
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.1
-0.3
-0.1
+0.1
-0.7
stress
nitrate 200 mM
-0.2
-0.4
-0.2
-0.1
-0.2
motility
outer cut, LB soft agar motility assay
+0.0
-0.2
-0.3
-0.2
-0.2
pH
Minimal media pH9
-0.1
-0.2
-0.1
-0.1
-0.4
stress
Sisomicin 0.001 mg/ml
-0.1
-0.3
-0.1
-0.2
-0.2
stress
Aluminum chloride 5 mM
-0.2
-0.2
-0.1
+0.0
-0.4
survival
4C survival; 1152 hrs
-0.1
-0.4
-0.2
-0.0
-0.1
stress
Spectinomycin 0.025 mg/ml
-0.0
-0.1
-0.1
-0.2
-0.3
survival
4C survival; 672 hrs
+0.0
-0.4
-0.1
+0.1
-0.3
stress
Cholin acetate 40 mM
-0.1
-0.2
-0.0
-0.2
-0.3
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.1
-0.1
-0.0
-0.1
-0.4
survival
4C survival; 360 hrs
-0.1
-0.3
-0.2
-0.1
+0.0
stress
copper (II) chloride 2.5 mM
+0.1
-0.2
-0.3
-0.3
+0.0
survival
4C survival; 192 hrs
-0.0
-0.2
-0.2
+0.1
-0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.0
-0.2
-0.1
-0.1
-0.3
motility
outer cut, LB soft agar motility assay
+0.1
-0.1
-0.2
-0.3
-0.1
carbon source
Carbon source Sucrose 10 mM
-0.0
-0.1
-0.1
+0.1
-0.5
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
+0.0
-0.1
+0.2
-0.4
carbon source
Carbon source Sucrose 5 mM
+0.0
+0.2
-0.0
-0.1
-0.4
stress
Thallium(I) acetate 0.008 mg/ml
+0.0
+0.2
+0.1
-0.1
+0.3
stress
Cisplatin 0.0032 mg/ml
+0.0
+0.2
-0.1
+0.0
+0.4
stress
Benzalkonium Chloride 0.008 mg/ml
-0.0
+0.1
+0.1
+0.2
+0.2
stress
Cobalt chloride 0.08 mM
-0.0
+0.2
+0.2
+0.2
+0.0
nitrogen source
L-Isoleucine (N)
+0.1
+0.0
+0.1
+0.1
+0.3
carbon source
D,L-Lactate (C)
+0.0
+0.2
+0.0
+0.0
+0.4
carbon source
D-Gluconic Acid (C)
+0.0
+0.1
-0.0
+0.2
+0.3
carbon source
D-Fructose (C)
+0.1
+0.1
+0.1
+0.2
+0.3
stress
Benzalkonium Chloride 0.016 mg/ml
+0.0
+0.3
+0.2
+0.3
+0.1
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