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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_17580 and AO356_17585 are separated by 116 nucleotides
AO356_17585 and AO356_17590 are separated by 6 nucleotides
AO356_17590 and AO356_17595 are separated by 223 nucleotides
AO356_17595 and AO356_17600 are separated by 52 nucleotides
AO356_17580: AO356_17580 - Fe-S protein, at 3,962,502 to 3,962,711
_17580
AO356_17585: AO356_17585 - hypothetical protein, at 3,962,828 to 3,963,490
_17585
AO356_17590: AO356_17590 - hypothetical protein, at 3,963,497 to 3,963,727
_17590
AO356_17595: AO356_17595 - hypothetical protein, at 3,963,951 to 3,964,172
_17595
AO356_17600: AO356_17600 - glucose dehydrogenase, at 3,964,225 to 3,966,639
_17600
Group
Condition
AO356
_17580
AO356
_17585
AO356
_17590
AO356
_17595
AO356
_17600
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
N.D.
-0.6
-0.8
N.D.
+0.3
stress
Benzalkonium Chloride 0.016 mg/ml
N.D.
-0.4
-0.6
N.D.
-0.1
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
N.D.
-0.2
-0.4
N.D.
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
N.D.
-0.1
-0.0
N.D.
-0.4
nitrogen source
Carnitine Hydrochloride (N)
N.D.
+0.1
-0.6
N.D.
-0.0
carbon source
L-Leucine (C)
N.D.
-0.1
-0.4
N.D.
-0.1
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
N.D.
-0.2
-0.3
N.D.
-0.1
resistance
20 mM putrescine
N.D.
-0.1
-0.3
N.D.
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
N.D.
+0.2
+0.0
N.D.
-0.6
carbon source
L-Aspartic Acid (C)
N.D.
-0.0
-0.4
N.D.
+0.1
carbon source
D-Xylose (C)
N.D.
-0.1
+0.3
N.D.
-0.4
stress
Cisplatin 0.0032 mg/ml
N.D.
-0.3
+0.4
N.D.
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
-0.4
+0.4
N.D.
-0.1
stress
perchlorate 75 mM
N.D.
-0.1
+0.3
N.D.
-0.3
carbon source
D-Xylose (C)
N.D.
+0.1
+0.4
N.D.
-0.5
stress
1-ethyl-3-methylimidazolium chloride 200 mM
N.D.
+0.1
-0.4
N.D.
+0.2
pH
Minimal media pH8
N.D.
+0.0
+0.3
N.D.
-0.3
carbon source
D-Galactose (C)
N.D.
+0.0
+0.4
N.D.
-0.4
carbon source
D,L-Lactate (C)
N.D.
-0.2
+0.3
N.D.
-0.1
stress
Chlorite 0.08 mM
N.D.
+0.1
+0.3
N.D.
-0.3
carbon source
D-Galactose (C)
N.D.
+0.1
+0.3
N.D.
-0.3
stress
KB-half, Pseudo5 supernatant
N.D.
-0.3
+0.1
N.D.
+0.4
pH
Minimal media pH6
N.D.
+0.2
+0.3
N.D.
-0.2
motility
outer cut, LB soft agar motility assay
N.D.
-0.2
+0.5
N.D.
-0.0
nitrogen source
nitrite (N)
N.D.
+0.2
+0.2
N.D.
-0.2
carbon source
D-Lactate (C)
N.D.
+0.0
+0.4
N.D.
+0.1
survival
4C survival; 1152 hrs
N.D.
-0.0
+0.5
N.D.
+0.1
stress
copper (II) chloride 2.5 mM
N.D.
+0.3
+0.2
N.D.
+0.1
carbon source
L-Lysine (C)
N.D.
+0.2
+0.4
N.D.
+0.1
motility
outer cut, LB soft agar motility assay
N.D.
+0.1
+0.4
N.D.
+0.3
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