Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_16980 and AO356_16990 are separated by 330 nucleotidesAO356_16990 and AO356_16995 are separated by 193 nucleotidesAO356_16995 and AO356_17000 are separated by 231 nucleotidesAO356_17000 and AO356_17005 are separated by 242 nucleotides AO356_16980: AO356_16980 - protoheme IX farnesyltransferase, at 3,826,624 to 3,827,511 _16980 AO356_16990: AO356_16990 - XRE family transcriptional regulator, at 3,827,842 to 3,828,156 _16990 AO356_16995: AO356_16995 - hypothetical protein, at 3,828,350 to 3,829,051 _16995 AO356_17000: AO356_17000 - diguanylate cyclase, at 3,829,283 to 3,830,296 _17000 AO356_17005: AO356_17005 - LysR family transcriptional regulator, at 3,830,539 to 3,831,456 _17005
Group Condition AO356_16980 AO356_16990 AO356_16995 AO356_17000 AO356_17005
stress nitrite 10 mM -2.3 +0.2 -0.5 +0.1 +0.2
stress copper (II) chloride 2.5 mM -2.3 -0.1 +0.3 -0.3 +0.2
stress Cholin acetate 40 mM -0.9 +0.1 +0.0 -0.6 -0.1
stress Chlorite 0.08 mM -1.2 -0.0 -0.2 -0.1 +0.1
stress Chlorite 0.04 mM -1.5 +0.0 +0.2 -0.1 +0.3
stress 1-ethyl-3-methylimidazolium acetate 20 mM -0.8 +0.1 -0.3 -0.1 +0.0
stress Aluminum chloride 5 mM -0.6 -0.1 -0.4 -0.0 +0.1
carbon source Carbon source D-Mannitol 2.5 mM +0.2 -0.3 -0.6 -0.2 -0.0
phage P5ss-5 phage 10-1 dilution SM calcl2 -0.2 +0.0 -0.2 -0.4 -0.1
stress Choline chloride 300 mM -0.9 +0.1 -0.0 +0.1 -0.2
stress Lomefloxacin 0.0005 mM -0.4 +0.1 -0.1 -0.5 +0.1
motility outer cut, LB soft agar motility assay -0.5 +0.0 -0.4 +0.1 +0.0
carbon source Carbon source Sucrose 5 mM +0.2 -0.2 -0.3 -0.2 -0.2
stress acetate 40 mM -0.7 +0.2 +0.1 -0.0 -0.1
carbon source Carbon source D-Mannitol 10 mM +0.1 +0.0 -0.4 +0.2 -0.4
stress Nickel (II) chloride 0.625 mM -0.2 -0.4 -0.3 +0.3 +0.1
carbon source L-Lysine (C) -0.5 -0.1 +0.5 -0.0 -0.1
stress 1-ethyl-3-methylimidazolium acetate 10 mM -0.5 +0.2 +0.3 -0.1 -0.0
carbon source L-Lysine (C) -0.3 -0.0 +0.6 -0.3 -0.1
stress Benzethonium chloride 0.025 mM -0.6 +0.2 +0.0 +0.1 +0.2
stress Cholin acetate 20 mM -0.5 +0.0 +0.3 +0.2 -0.0
stress syringaldehyde 5 mM -0.3 +0.3 -0.1 +0.3 -0.1
survival 4C survival; 192 hrs +0.3 +0.3 -0.3 -0.1 +0.1
stress Nickel (II) chloride 0.625 mM +0.2 -0.3 -0.2 +0.5 +0.2
stress Benzalkonium Chloride 0.016 mg/ml +0.8 +0.5 -0.3 -0.2 +0.0
motility outer cut, LB soft agar motility assay -0.1 +0.5 -0.0 +0.4 +0.0
carbon source L-Histidine (C) +0.7 +0.2 +0.2 -0.1 +0.0
anaerobic Nitrate reduction with yeast extract +0.7 -0.3 +0.7 +0.1 -0.1
stress methylglyoxal 0.016 vol% +0.6 -0.0 +0.2 +0.5 +0.1
stress Sisomicin 0.001 mg/ml +3.0 +0.3 +0.1 -0.2 +0.1
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