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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_16900 and AO356_16905 are separated by 110 nucleotides
AO356_16905 and AO356_16910 overlap by 4 nucleotides
AO356_16910 and AO356_16915 are separated by 129 nucleotides
AO356_16915 and AO356_16920 are separated by 139 nucleotides
AO356_16900: AO356_16900 - transporter, at 3,808,134 to 3,810,473
_16900
AO356_16905: AO356_16905 - hypothetical protein, at 3,810,584 to 3,811,543
_16905
AO356_16910: AO356_16910 - RNA polymerase subunit sigma, at 3,811,540 to 3,812,028
_16910
AO356_16915: AO356_16915 - AraC family transcriptional regulator, at 3,812,158 to 3,813,033
_16915
AO356_16920: AO356_16920 - hypothetical protein, at 3,813,173 to 3,814,075
_16920
Group
Condition
AO356
_16900
AO356
_16905
AO356
_16910
AO356
_16915
AO356
_16920
nitrogen source
nitrite (N)
+0.0
+0.0
-0.0
-1.2
-3.3
stress
Chlorite 0.08 mM
-1.3
-1.0
-1.4
+0.2
-0.2
stress
Chlorite 0.04 mM
-0.9
-0.7
-1.3
+0.1
-0.1
stress
Paraquat dichloride 0.0625 mg/ml
-0.6
-0.6
-0.5
+0.1
-0.0
anaerobic
Nitrate reduction with yeast extract
-0.3
-0.1
-0.1
+0.0
-0.9
nitrogen source
D-Serine (N)
-0.1
-0.0
-0.6
+0.1
-0.6
stress
Paraquat dichloride 0.0625 mg/ml
-0.5
+0.2
-0.9
+0.1
+0.0
stress
perchlorate 75 mM
-0.2
-0.3
-0.3
+0.1
-0.3
stress
Rifampicin 0.0024 mg/ml
-0.2
-0.4
-0.1
+0.0
-0.2
stress
Rifampicin 0.0016 mg/ml
-0.1
-0.3
-0.5
-0.1
+0.1
survival
4C survival; 1152 hrs
-0.0
-0.1
+0.1
-0.1
-0.5
carbon source
Carbon source Sucrose 2.5 mM
-0.1
-0.1
-0.2
+0.1
-0.3
stress
Spectinomycin 0.025 mg/ml
-0.2
-0.2
-0.1
+0.1
-0.2
carbon source
Carbon source D-Mannitol 5 mM
+0.1
-0.4
-0.1
+0.1
-0.1
nitrogen source
L-Leucine (N)
-0.1
-0.2
-0.1
+0.0
+0.4
carbon source
L-Malic (C)
-0.0
+0.2
-0.4
+0.0
+0.4
stress
copper (II) chloride 2.5 mM
+0.1
+0.0
-0.7
-0.1
+0.9
stress
Ceftazidime 0.2 mg/ml
+0.1
-0.1
+0.3
+0.1
-0.2
stress
Sisomicin 0.001 mg/ml
-0.1
+0.2
+0.2
+0.1
-0.2
carbon source
L-Glutamine (C)
-0.1
+0.3
-0.3
+0.0
+0.3
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.1
-0.2
+0.0
+0.2
+0.4
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
+0.2
-0.3
+0.1
+0.5
motility
outer cut, LB soft agar motility assay
+0.1
+0.3
-0.1
-0.1
+0.6
stress
methylglyoxal 0.016 vol%
-0.0
+0.1
+0.3
+0.1
+0.4
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.0
+0.2
+0.4
+0.0
+0.2
motility
outer cut, LB soft agar motility assay
-0.1
-0.0
+0.5
+0.1
+0.5
stress
syringaldehyde 5 mM
+0.1
+0.2
+0.2
+0.1
+0.5
stress
Benzalkonium Chloride 0.016 mg/ml
+0.3
+0.2
+0.4
+0.0
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.1
+0.4
-0.0
+0.2
+0.6
stress
KB-half, Pseudo5 supernatant
+0.1
+0.2
+0.4
+0.2
+0.6
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