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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_16850 and AO356_16855 are separated by 12 nucleotides
AO356_16855 and AO356_16860 are separated by 94 nucleotides
AO356_16860 and AO356_16865 are separated by 27 nucleotides
AO356_16865 and AO356_16870 overlap by 4 nucleotides
AO356_16850: AO356_16850 - serine hydroxymethyltransferase, at 3,798,507 to 3,799,745
_16850
AO356_16855: AO356_16855 - threonine synthase, at 3,799,758 to 3,801,011
_16855
AO356_16860: AO356_16860 - reactive intermediate/imine deaminase, at 3,801,106 to 3,801,537
_16860
AO356_16865: AO356_16865 - FAD-dependent oxidoreductase, at 3,801,565 to 3,802,737
_16865
AO356_16870: AO356_16870 - benzoate transporter, at 3,802,734 to 3,803,939
_16870
Group
Condition
AO356
_16850
AO356
_16855
AO356
_16860
AO356
_16865
AO356
_16870
nitrogen source
D-Serine (N)
-2.0
-1.9
-4.3
-2.2
-4.4
pH
Minimal media pH6
-3.0
-0.5
-0.8
-0.8
-4.7
pH
Minimal media pH6
-2.9
-0.3
-0.9
-0.6
-4.4
pH
Minimal media pH7
-1.2
-0.2
-0.6
-0.3
-4.9
carbon source
m-Inositol (C)
-1.7
-0.0
-0.5
-0.6
-3.9
carbon source
m-Inositol (C)
-1.6
-0.2
-0.5
-0.2
-4.1
pH
Minimal media pH7
-1.5
-0.3
-0.5
-0.6
-3.6
carbon source
L-Arabinose (C)
-1.5
-0.2
-0.5
-0.3
-3.0
carbon source
D-Galactose (C)
-0.9
-0.2
-0.3
-0.5
-3.3
carbon source
L-Arabinose (C)
-1.1
-0.2
-0.3
-0.5
-2.8
carbon source
D-Lactate (C)
-1.3
-0.2
-0.6
-0.3
-2.4
carbon source
D-Lactate (C)
-1.3
-0.2
-0.3
-0.4
-2.7
carbon source
D-Galactose (C)
-1.0
-0.2
-0.4
-0.3
-2.2
pH
Minimal media pH8
-0.8
-0.2
-0.3
-0.2
-2.6
carbon source
D-Glucose (C)
-0.8
-0.1
-0.1
-0.5
-2.4
carbon source
acetate (C)
-1.3
-0.0
-0.2
-0.2
-2.2
pH
Minimal media pH8
-0.9
-0.2
-0.1
-0.3
-2.3
carbon source
D-Sorbitol (C)
-0.6
-0.1
-0.2
-0.2
-2.6
nitrogen source
Putrescine (N)
-0.7
-0.1
-0.3
-0.3
-1.8
carbon source
acetate (C)
-0.9
+0.1
-0.2
-0.1
-1.9
carbon source
D-Glucose (C)
-0.6
-0.1
+0.1
-0.3
-2.1
carbon source
D-Fructose (C)
-0.7
-0.1
-0.3
-0.2
-1.6
carbon source
D,L-Lactate (C)
-0.6
-0.0
+0.0
-0.1
-1.9
carbon source
D,L-Lactate (C)
-0.6
-0.0
+0.0
-0.1
-1.8
carbon source
D-Sorbitol (C)
-0.3
+0.1
-0.2
-0.2
-1.6
carbon source
L-Lactate (C)
-0.3
-0.0
-0.2
-0.3
-1.6
carbon source
succinate (C)
-0.4
+0.1
-0.2
-0.1
-1.4
carbon source
succinate (C)
-0.3
-0.1
-0.2
-0.1
-1.2
carbon source
pyruvate (C)
-0.4
-0.1
-0.1
-0.3
-1.0
stress
KB-half, Pseudo5 supernatant
+0.7
+0.6
+0.8
+0.6
+0.3
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