Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_16700 and AO356_16705 are separated by 88 nucleotidesAO356_16705 and AO356_16710 are separated by 39 nucleotidesAO356_16710 and AO356_16715 are separated by 311 nucleotidesAO356_16715 and AO356_16720 are separated by 186 nucleotides AO356_16700: AO356_16700 - 1,2-oxophytodienoate reductase, at 3,766,669 to 3,767,772 _16700 AO356_16705: AO356_16705 - glycoside hydrolase, at 3,767,861 to 3,769,060 _16705 AO356_16710: AO356_16710 - cysteine biosynthesis protein CysZ, at 3,769,100 to 3,769,855 _16710 AO356_16715: AO356_16715 - thioredoxin reductase, at 3,770,167 to 3,771,129 _16715 AO356_16720: AO356_16720 - 4-aminobutyrate aminotransferase, at 3,771,316 to 3,772,566 _16720
Group Condition AO356_16700 AO356_16705 AO356_16710 AO356_16715 AO356_16720
stress Cisplatin 0.0032 mg/ml -0.2 -0.2 -0.1 N.D. -0.1
carbon source D-Mannose (C) -0.3 -0.2 +0.0 N.D. -0.2
carbon source D-Ribose (C) -0.2 +0.1 -0.1 N.D. -0.4
carbon source Cytidine (C) -0.2 -0.2 +0.1 N.D. -0.2
motility outer cut, LB soft agar motility assay +0.2 -0.0 -0.2 N.D. -0.4
nitrogen source L-tyrosine (N) +0.1 +0.1 -0.5 N.D. -0.2
stress copper (II) chloride 2.5 mM -0.5 -0.0 +0.2 N.D. -0.0
stress 1-ethyl-3-methylimidazolium acetate 20 mM -0.5 +0.0 -0.1 N.D. +0.2
stress 1-ethyl-3-methylimidazolium lysine 10 mM -0.0 -0.1 -0.4 N.D. +0.3
stress nitrate 200 mM -0.2 +0.1 -0.3 N.D. +0.2
stress methylglyoxal 0.016 vol% +0.0 -0.1 +0.2 N.D. -0.3
carbon source Carbon source Sucrose 10 mM +0.3 -0.1 +0.0 N.D. -0.3
carbon source Carbon source D-Mannitol 5 mM +0.2 +0.1 -0.1 N.D. -0.3
carbon source L-Aspartic Acid (C) -0.4 -0.0 +0.2 N.D. +0.1
nitrogen source Urea (N) -0.3 +0.3 +0.1 N.D. -0.1
stress Sisomicin 0.001 mg/ml +0.4 -0.0 -0.1 N.D. -0.3
anaerobic Nitrate reduction with yeast extract -0.3 -0.4 +0.4 N.D. +0.3
lb LB -0.1 +0.2 -0.1 N.D. +0.1
carbon source Carbon source D-Mannitol 10 mM +0.4 -0.1 -0.1 N.D. -0.1
stress Chlorite 0.04 mM +0.4 +0.0 -0.1 N.D. -0.2
phage P5ss-5 phage 10-1 dilution SM calcl2 +0.2 +0.2 +0.0 N.D. -0.3
carbon source Carbon source D,L-Lactate 10 mM +0.3 +0.1 -0.1 N.D. -0.1
carbon source Carbon source D-Mannitol 2.5 mM +0.4 +0.0 -0.1 N.D. -0.1
survival 4C survival; 672 hrs +0.3 -0.1 +0.2 N.D. -0.1
stress Lomefloxacin 0.0005 mM +0.2 -0.2 +0.1 N.D. +0.2
stress Spectinomycin 0.025 mg/ml +0.4 -0.1 +0.0 N.D. +0.1
carbon source Carbon source D-Glucose 10 mM +0.4 +0.2 +0.0 N.D. -0.0
stress Vanillin 1.25 mM +0.4 +0.0 +0.1 N.D. +0.2
stress KB-half, Pseudo5 supernatant -0.0 +0.2 +0.0 N.D. +0.8
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 +0.4 +0.2 +0.1 N.D. +0.4
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