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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_16615 and AO356_16620 are separated by 367 nucleotides
AO356_16620 and AO356_16625 are separated by 222 nucleotides
AO356_16625 and AO356_16630 are separated by 139 nucleotides
AO356_16630 and AO356_16635 are separated by 10 nucleotides
AO356_16615: AO356_16615 - hypothetical protein, at 3,749,846 to 3,750,052
_16615
AO356_16620: AO356_16620 - hypothetical protein, at 3,750,420 to 3,750,701
_16620
AO356_16625: AO356_16625 - glycerol acyltransferase, at 3,750,924 to 3,752,090
_16625
AO356_16630: AO356_16630 - hypothetical protein, at 3,752,230 to 3,752,412
_16630
AO356_16635: AO356_16635 - hypothetical protein, at 3,752,423 to 3,752,683
_16635
Group
Condition
AO356
_16615
AO356
_16620
AO356
_16625
AO356
_16630
AO356
_16635
stress
nitrite 10 mM
-0.1
N.D.
N.D.
-0.1
-1.5
motility
outer cut, LB soft agar motility assay
-0.3
N.D.
N.D.
-0.8
-0.5
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.5
N.D.
N.D.
+0.2
-1.0
resistance
20 mM putrescine
-0.3
N.D.
N.D.
-0.2
-0.8
carbon source
L-Lysine (C)
-0.0
N.D.
N.D.
-0.2
-0.9
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
N.D.
N.D.
-0.2
-0.5
nitrogen source
Putrescine (N)
-0.6
N.D.
N.D.
-0.3
+0.1
stress
KB-half, Pseudo5 supernatant
-1.1
N.D.
N.D.
+0.2
+0.2
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.1
N.D.
N.D.
+0.1
-0.7
stress
Chlorite 0.08 mM
-0.1
N.D.
N.D.
+0.2
-0.7
carbon source
Ethanol (C)
-0.3
N.D.
N.D.
+0.2
-0.5
carbon source
m-Inositol (C)
-0.3
N.D.
N.D.
-0.5
+0.3
stress
Sisomicin 0.001 mg/ml
+0.3
N.D.
N.D.
-0.9
+0.3
stress
1-ethyl-3-methylimidazolium acetate 5 mM
-0.4
N.D.
N.D.
+0.3
-0.2
temperature
LB 37C
-0.3
N.D.
N.D.
-0.4
+0.4
nitrogen source
D-Serine (N)
-0.1
N.D.
N.D.
+0.6
-0.7
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.5
N.D.
N.D.
-0.0
+0.4
carbon source
Carbon source Sucrose 5 mM
-0.2
N.D.
N.D.
-0.3
+0.5
stress
Paraquat dichloride 0.0625 mg/ml
+0.6
N.D.
N.D.
-0.3
-0.2
stress
Benzethonium chloride 0.025 mM
+0.5
N.D.
N.D.
-0.4
+0.1
stress
Vanillin 2.5 mM
+0.3
N.D.
N.D.
-0.4
+0.4
carbon source
Carbon source D-Glucose 10 mM
+0.6
N.D.
N.D.
+0.2
-0.4
carbon source
D-Trehalose (C)
+0.1
N.D.
N.D.
+0.8
-0.4
stress
Cobalt chloride 0.08 mM
-0.2
N.D.
N.D.
+0.4
+0.3
stress
Benzalkonium Chloride 0.016 mg/ml
+0.3
N.D.
N.D.
+0.6
-0.3
stress
copper (II) chloride 2.5 mM
+0.6
N.D.
N.D.
-0.4
+0.4
carbon source
Carbon source Sucrose 2.5 mM
+0.4
N.D.
N.D.
+0.1
+0.5
carbon source
Carbon source D-Mannitol 2.5 mM
+0.6
N.D.
N.D.
+0.0
+0.3
carbon source
D-Trehalose (C)
-0.1
N.D.
N.D.
+0.7
+0.3
anaerobic
Nitrate reduction with yeast extract
+0.9
N.D.
N.D.
+0.2
+0.1
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