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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_16610 and AO356_16615 are separated by 115 nucleotides
AO356_16615 and AO356_16620 are separated by 367 nucleotides
AO356_16620 and AO356_16625 are separated by 222 nucleotides
AO356_16625 and AO356_16630 are separated by 139 nucleotides
AO356_16610: AO356_16610 - hypothetical protein, at 3,749,146 to 3,749,730
_16610
AO356_16615: AO356_16615 - hypothetical protein, at 3,749,846 to 3,750,052
_16615
AO356_16620: AO356_16620 - hypothetical protein, at 3,750,420 to 3,750,701
_16620
AO356_16625: AO356_16625 - glycerol acyltransferase, at 3,750,924 to 3,752,090
_16625
AO356_16630: AO356_16630 - hypothetical protein, at 3,752,230 to 3,752,412
_16630
Group
Condition
AO356
_16610
AO356
_16615
AO356
_16620
AO356
_16625
AO356
_16630
phage
P5ss-5 phage 10-1 dilution SM calcl2
-3.6
-0.5
N.D.
N.D.
+0.2
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-2.9
-0.1
N.D.
N.D.
+0.3
motility
outer cut, LB soft agar motility assay
-1.2
-0.3
N.D.
N.D.
-0.8
stress
Rifampicin 0.0024 mg/ml
-2.1
-0.3
N.D.
N.D.
+0.3
motility
outer cut, LB soft agar motility assay
-1.5
-0.6
N.D.
N.D.
+0.0
stress
Cholin acetate 40 mM
-1.5
-0.0
N.D.
N.D.
-0.1
stress
Sisomicin 0.001 mg/ml
-0.9
+0.3
N.D.
N.D.
-0.9
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-1.0
-0.5
N.D.
N.D.
-0.0
carbon source
D-Alanine (C)
-1.3
-0.2
N.D.
N.D.
+0.0
survival
4C survival; 360 hrs
-0.9
-0.0
N.D.
N.D.
-0.3
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.4
-0.7
N.D.
N.D.
-0.1
carbon source
L-Histidine (C)
-0.5
-0.3
N.D.
N.D.
-0.3
stress
Nickel (II) chloride 0.625 mM
-1.0
-0.0
N.D.
N.D.
-0.0
carbon source
L-Lysine (C)
-0.8
-0.3
N.D.
N.D.
+0.0
survival
4C survival; 1152 hrs
-0.7
+0.1
N.D.
N.D.
-0.4
stress
KB-half, Pseudo5 supernatant
-0.1
-1.1
N.D.
N.D.
+0.2
stress
Choline chloride 500 mM
-0.6
-0.5
N.D.
N.D.
+0.2
stress
perchlorate 75 mM
-0.6
-0.5
N.D.
N.D.
+0.2
stress
Cisplatin 0.0032 mg/ml
-1.2
+0.5
N.D.
N.D.
-0.2
stress
Nickel (II) chloride 0.625 mM
-0.9
-0.2
N.D.
N.D.
+0.2
stress
Cisplatin 0.0032 mg/ml
-0.9
+0.3
N.D.
N.D.
-0.2
stress
copper (II) chloride 2.5 mM
-1.0
+0.6
N.D.
N.D.
-0.4
stress
Cobalt chloride 0.08 mM
-0.7
-0.2
N.D.
N.D.
+0.5
stress
Benzethonium chloride 0.025 mM
-0.3
+0.5
N.D.
N.D.
-0.4
stress
Paraquat dichloride 0.0625 mg/ml
-0.5
+0.6
N.D.
N.D.
-0.3
stress
Cobalt chloride 0.08 mM
-0.4
-0.2
N.D.
N.D.
+0.4
stress
Thallium(I) acetate 0.008 mg/ml
-0.6
+0.6
N.D.
N.D.
-0.1
nitrogen source
D-Serine (N)
-0.4
-0.1
N.D.
N.D.
+0.6
anaerobic
Nitrate reduction with yeast extract
-0.1
+0.9
N.D.
N.D.
+0.2
stress
Benzalkonium Chloride 0.016 mg/ml
+1.7
+0.3
N.D.
N.D.
+0.6
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