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Gene
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Cofit
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_16380 and AO356_16385 are separated by 112 nucleotides
AO356_16385 and AO356_16390 are separated by 61 nucleotides
AO356_16390 and AO356_16395 are separated by 103 nucleotides
AO356_16395 and AO356_16400 are separated by 332 nucleotides
AO356_16380: AO356_16380 - hypothetical protein, at 3,701,064 to 3,701,420
_16380
AO356_16385: AO356_16385 - transcriptional regulator, at 3,701,533 to 3,702,447
_16385
AO356_16390: AO356_16390 - tRNA-Met, at 3,702,509 to 3,702,585
_16390
AO356_16395: AO356_16395 - chemotaxis protein, at 3,702,689 to 3,704,746
_16395
AO356_16400: AO356_16400 - Fosmidomycin resistance protein, at 3,705,079 to 3,706,296
_16400
Group
Condition
AO356
_16380
AO356
_16385
AO356
_16390
AO356
_16395
AO356
_16400
anaerobic
Nitrate reduction with yeast extract
-0.3
-0.3
N.D.
-0.6
-0.1
stress
copper (II) chloride 2.5 mM
+0.1
-0.8
N.D.
-0.5
-0.1
pH
Minimal media pH6
-0.3
-0.7
N.D.
+0.3
-0.1
survival
4C survival; 360 hrs
-0.0
-0.7
N.D.
-0.1
+0.1
stress
Sisomicin 0.001 mg/ml
+0.0
+0.1
N.D.
-0.6
-0.2
pH
Minimal media pH6
-0.4
-0.8
N.D.
+0.5
+0.1
stress
Lomefloxacin 0.0005 mM
-0.1
+0.3
N.D.
-0.7
+0.1
stress
Chlorite 0.08 mM
+0.0
+0.2
N.D.
-0.6
+0.0
stress
KB-half, Pseudo5 supernatant
-0.2
-0.3
N.D.
+0.5
-0.2
nitrogen source
D-Serine (N)
-0.6
+0.2
N.D.
+0.3
+0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.3
+0.1
N.D.
+0.4
+0.1
motility
outer cut, LB soft agar motility assay
+0.6
-0.3
N.D.
-0.3
+0.2
stress
perchlorate 75 mM
-0.0
-0.3
N.D.
+0.5
+0.0
stress
syringaldehyde 10 mM
-0.0
-0.3
N.D.
+0.6
+0.0
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.1
-0.1
N.D.
+1.1
-0.7
stress
Chlorite 0.04 mM
-0.1
+0.2
N.D.
+0.5
-0.1
carbon source
Glycerol (C)
+0.2
-0.1
N.D.
+0.5
-0.0
lb
LB
-0.1
-0.0
N.D.
+0.6
+0.1
carbon source
D-Sorbitol (C)
+0.2
+0.0
N.D.
+0.5
-0.0
carbon source
L-Proline (C)
+0.5
+0.5
N.D.
-0.3
+0.1
carbon source
Carbon source D-Mannitol 2.5 mM
+0.2
+0.1
N.D.
+0.3
+0.2
carbon source
Ethanol (C)
+0.1
+0.3
N.D.
+0.5
-0.0
carbon source
Carnitine Hydrochloride (C)
+0.2
+0.2
N.D.
+0.3
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
-0.0
N.D.
+0.4
+0.2
carbon source
D-Galactose (C)
+0.4
+0.2
N.D.
+0.4
-0.0
carbon source
m-Inositol (C)
+0.4
+0.4
N.D.
+0.2
-0.0
carbon source
D-Galactose (C)
+0.4
+0.4
N.D.
+0.3
-0.1
carbon source
m-Inositol (C)
+0.5
+0.3
N.D.
+0.2
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.1
N.D.
+0.9
+0.1
carbon source
L-Proline (C)
+0.7
+0.3
N.D.
+0.3
-0.0
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