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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_16350 and AO356_16355 are separated by 191 nucleotides
AO356_16355 and AO356_16360 are separated by 94 nucleotides
AO356_16360 and AO356_16365 overlap by 4 nucleotides
AO356_16365 and AO356_16370 overlap by 14 nucleotides
AO356_16350: AO356_16350 - hypothetical protein, at 3,696,277 to 3,696,834
_16350
AO356_16355: AO356_16355 - hypothetical protein, at 3,697,026 to 3,698,300
_16355
AO356_16360: AO356_16360 - hypothetical protein, at 3,698,395 to 3,698,682
_16360
AO356_16365: AO356_16365 - hypothetical protein, at 3,698,679 to 3,699,377
_16365
AO356_16370: AO356_16370 - hypothetical protein, at 3,699,364 to 3,700,089
_16370
Group
Condition
AO356
_16350
AO356
_16355
AO356
_16360
AO356
_16365
AO356
_16370
pH
Minimal media pH6
-2.9
+0.1
+0.3
+0.1
-1.2
pH
Minimal media pH6
-1.6
+0.1
+0.2
-0.0
-1.6
stress
Lomefloxacin 0.0005 mM
-0.9
-0.0
-0.0
-0.0
-0.4
stress
KB-half, Pseudo5 supernatant
-0.6
-0.3
-0.2
+0.1
+0.0
carbon source
L-Arabinose (C)
-0.7
-0.1
+0.0
-0.0
-0.1
carbon source
casaminos (C)
-0.6
-0.0
-0.1
+0.0
-0.2
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.6
-0.1
+0.1
-0.0
-0.1
motility
outer cut, LB soft agar motility assay
-0.7
-0.1
+0.1
-0.2
+0.3
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.4
-0.1
+0.2
-0.3
-0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.3
+0.0
-0.4
+0.1
+0.1
anaerobic
Nitrate reduction with yeast extract
-0.6
+0.1
+0.3
-0.0
-0.3
nitrogen source
Thymine (N)
-0.6
+0.0
-0.0
-0.1
+0.3
nitrogen source
Inosine (N)
-0.4
+0.0
+0.0
-0.1
+0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.5
+0.1
+0.3
-0.0
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.2
-0.4
-0.1
-0.1
+0.3
stress
methylglyoxal 0.016 vol%
-0.6
+0.2
-0.1
+0.1
+0.3
nitrogen source
D-Serine (N)
-0.3
-0.1
+0.1
-0.0
+0.4
carbon source
Glycerol (C)
+0.6
+0.0
-0.2
+0.0
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.4
+0.1
+0.1
-0.1
-0.2
stress
copper (II) chloride 2.5 mM
+0.3
+0.1
-0.3
+0.0
+0.1
carbon source
D-Lactate (C)
+0.5
+0.1
-0.0
-0.1
-0.1
carbon source
acetate (C)
+0.5
+0.0
+0.1
+0.0
-0.2
survival
4C survival; 360 hrs
+0.7
+0.0
+0.0
-0.2
+0.0
stress
Paraquat dichloride 0.0625 mg/ml
+0.6
+0.1
-0.1
-0.1
-0.0
carbon source
Carbon source Sucrose 2.5 mM
+0.7
-0.0
+0.1
-0.0
-0.1
stress
Chlorite 0.04 mM
+0.3
+0.2
-0.1
+0.3
+0.1
carbon source
Carbon source Sucrose 10 mM
+0.6
-0.0
+0.1
+0.1
+0.0
carbon source
Glycerol (C)
+0.5
-0.0
+0.1
+0.0
+0.2
carbon source
D-Sorbitol (C)
+0.5
+0.2
+0.1
-0.0
+0.1
motility
outer cut, LB soft agar motility assay
+0.0
+0.3
+0.3
-0.2
+0.4
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