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Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_16080 and AO356_16085 overlap by 11 nucleotides
AO356_16085 and AO356_16090 are separated by 77 nucleotides
AO356_16090 and AO356_16095 are separated by 233 nucleotides
AO356_16095 and AO356_16100 are separated by 338 nucleotides
AO356_16080: AO356_16080 - ATPase, at 3,637,432 to 3,640,380
_16080
AO356_16085: AO356_16085 - MFS transporter, at 3,640,370 to 3,640,546
_16085
AO356_16090: AO356_16090 - glutamyl-Q tRNA(Asp) ligase, at 3,640,624 to 3,641,505
_16090
AO356_16095: AO356_16095 - molecular chaperone DnaK, at 3,641,739 to 3,642,182
_16095
AO356_16100: AO356_16100 - aminotransferase, at 3,642,521 to 3,643,693
_16100
Group
Condition
AO356
_16080
AO356
_16085
AO356
_16090
AO356
_16095
AO356
_16100
carbon source
L-Histidine (C)
-3.9
-4.5
-0.2
-2.8
+0.0
carbon source
L-Histidine (C)
-3.5
-4.9
+0.0
-1.7
-0.0
carbon source
m-Inositol (C)
-2.1
-1.0
-0.2
-3.6
+0.1
carbon source
D-Xylose (C)
-2.3
-1.6
+0.0
-2.9
+0.1
carbon source
m-Inositol (C)
-2.2
-0.6
-0.2
-3.8
+0.1
carbon source
acetate (C)
-2.2
-1.6
-0.0
-2.7
+0.1
carbon source
acetate (C)
-2.0
-1.6
-0.1
-2.7
+0.1
carbon source
D-Xylose (C)
-2.1
-1.3
+0.2
-2.8
-0.0
pH
Minimal media pH9
-2.5
-0.2
-0.0
-3.3
+0.0
nitrogen source
L-Isoleucine (N)
-1.5
-0.7
-0.1
-3.3
-0.0
carbon source
L-Alanine (C)
-1.5
-0.8
-0.2
-2.6
-0.2
carbon source
L-Leucine (C)
-1.3
-1.4
+0.0
-2.5
-0.2
stress
copper (II) chloride 2.5 mM
-0.7
-1.6
-0.2
-2.9
+0.1
carbon source
L-Proline (C)
-2.8
-2.1
+0.1
-0.5
+0.0
carbon source
Carnitine Hydrochloride (C)
-2.2
+0.0
+0.1
-3.1
-0.1
carbon source
L-Arabinose (C)
-1.7
-0.4
+0.2
-2.8
-0.2
carbon source
L-Arabinose (C)
-1.4
-0.5
+0.1
-3.0
+0.1
stress
Chlorite 0.08 mM
-0.2
-0.3
-0.4
-3.9
+0.0
carbon source
D-Galactose (C)
-1.4
-0.8
+0.1
-2.7
+0.1
nitrogen source
Gly-Glu (N)
-0.9
-0.3
-0.2
-3.3
+0.0
carbon source
D-Trehalose (C)
-1.1
-0.7
+0.1
-2.7
-0.1
carbon source
D-Galactose (C)
-1.4
-0.9
+0.1
-2.4
+0.1
carbon source
L-Arginine (C)
-2.1
-0.4
+0.3
-2.0
+0.1
nitrogen source
L-Leucine (N)
-1.7
+0.3
+0.2
-2.9
+0.2
carbon source
L-Arginine (C)
-2.3
-0.3
+0.3
-1.8
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-1.8
-0.9
+0.4
-1.5
-0.1
carbon source
L-Asparagine (C)
-2.5
-1.8
+0.2
+0.8
-0.0
carbon source
L-Lysine (C)
-0.6
+1.3
+0.0
-2.9
+0.2
carbon source
L-Isoleucine (C)
+0.7
+1.4
-0.4
-3.3
-0.1
nitrogen source
Adenosine (N)
+1.8
+1.2
+0.0
-1.6
-0.1
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