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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_16035 and AO356_16040 are separated by 108 nucleotides
AO356_16040 and AO356_16045 are separated by 158 nucleotides
AO356_16045 and AO356_16050 are separated by 200 nucleotides
AO356_16050 and AO356_16055 are separated by 327 nucleotides
AO356_16035: AO356_16035 - hypothetical protein, at 3,622,918 to 3,625,863
_16035
AO356_16040: AO356_16040 - SAM-dependent methyltransferase, at 3,625,972 to 3,626,988
_16040
AO356_16045: AO356_16045 - acetyl-CoA synthetase, at 3,627,147 to 3,629,084
_16045
AO356_16050: AO356_16050 - glucose-6-phosphate isomerase, at 3,629,285 to 3,630,949
_16050
AO356_16055: AO356_16055 - pantoate--beta-alanine ligase, at 3,631,277 to 3,632,137
_16055
Group
Condition
AO356
_16035
AO356
_16040
AO356
_16045
AO356
_16050
AO356
_16055
carbon source
NAG (C)
-0.1
-0.4
-0.7
-3.4
N.D.
pH
Minimal media pH7
-0.1
-0.2
-0.3
-3.8
N.D.
nitrogen source
Thymine (N)
-0.1
-0.1
-0.0
-4.0
N.D.
nitrogen source
Adenosine (N)
-0.0
-0.1
-0.1
-4.0
N.D.
nitrogen source
Inosine (N)
-0.0
-0.1
-0.0
-3.9
N.D.
pH
Minimal media pH6
-0.1
-0.1
-0.0
-3.9
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.0
-0.0
+0.0
-4.0
N.D.
nitrogen source
Uridine (N)
-0.0
-0.0
-0.1
-3.9
N.D.
carbon source
Inosine (C)
-0.2
-0.2
-0.5
-3.1
N.D.
nitrogen source
nitrite (N)
-0.0
+0.0
-0.1
-3.8
N.D.
pH
Minimal media pH8
+0.0
+0.1
-0.1
-3.9
N.D.
nitrogen source
L-Isoleucine (N)
-0.1
-0.3
-0.2
-3.3
N.D.
carbon source
Uridine (C)
-0.1
+0.0
-0.3
-3.5
N.D.
carbon source
D-Ribose (C)
-0.1
-0.7
-0.4
-2.6
N.D.
carbon source
D-Sorbitol (C)
-0.0
-0.1
-0.1
-3.5
N.D.
pH
Minimal media pH8
-0.0
-0.1
-0.1
-3.5
N.D.
pH
Minimal media pH7
-0.0
+0.0
-0.1
-3.6
N.D.
carbon source
Glycerol (C)
+0.0
-0.2
-0.3
-3.2
N.D.
nitrogen source
Adenine (N)
-0.0
+0.1
-0.0
-3.7
N.D.
carbon source
Glycerol (C)
-0.0
-0.2
-0.3
-3.1
N.D.
survival
4C survival; 360 hrs
-0.2
-0.2
-0.1
-3.1
N.D.
nitrogen source
Cytosine (N)
-0.0
+0.0
+0.1
-3.6
N.D.
carbon source
Carbon source D-Glucose 10 mM
+0.1
-0.3
-0.2
-3.1
N.D.
nitrogen source
L-Phenylalanine (N)
-0.2
+0.1
-0.0
-3.4
N.D.
carbon source
m-Inositol (C)
+0.1
+0.1
-0.0
-3.5
N.D.
carbon source
Carbon source D-Mannitol 5 mM
+0.1
-0.3
-0.1
-3.0
N.D.
nitrogen source
L-Leucine (N)
-0.1
+0.2
+0.0
-3.4
N.D.
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.0
-0.0
-0.2
+3.7
N.D.
stress
Lomefloxacin 0.0005 mM
-0.0
-0.1
-0.1
+4.5
N.D.
stress
Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.0
-0.0
+5.4
N.D.
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