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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_16005 and AO356_16010 are separated by 1 nucleotides
AO356_16010 and AO356_16015 are separated by 2 nucleotides
AO356_16015 and AO356_16020 are separated by 223 nucleotides
AO356_16020 and AO356_16025 are separated by 268 nucleotides
AO356_16005: AO356_16005 - methyltransferase, at 3,617,233 to 3,618,102
_16005
AO356_16010: AO356_16010 - type II secretion system protein F, at 3,618,104 to 3,619,321
_16010
AO356_16015: AO356_16015 - general secretion pathway protein GspE, at 3,619,324 to 3,621,033
_16015
AO356_16020: AO356_16020 - fimbrial protein, at 3,621,257 to 3,621,667
_16020
AO356_16025: AO356_16025 - phospholipid-binding protein, at 3,621,936 to 3,622,289
_16025
Group
Condition
AO356
_16005
AO356
_16010
AO356
_16015
AO356
_16020
AO356
_16025
nitrogen source
Gly-Glu (N)
-2.6
-0.2
-0.3
-0.6
-0.1
survival
4C survival; 360 hrs
-1.1
+0.1
-0.0
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
-0.4
-0.2
-0.3
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
-0.6
-0.2
-0.1
-0.0
-0.2
stress
Choline chloride 500 mM
-0.3
-0.0
-0.1
+0.1
-0.6
nitrogen source
L-Isoleucine (N)
-0.5
-0.0
-0.0
-0.0
-0.3
carbon source
L-Lysine (C)
-0.4
+0.1
-0.2
-0.3
-0.1
carbon source
Carbon source Sucrose 5 mM
-0.2
-0.2
-0.1
-0.2
-0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.3
-0.1
-0.0
-0.6
+0.1
carbon source
L-Lactate (C)
-0.5
+0.1
-0.2
-0.1
-0.2
carbon source
Fumarate (C)
-0.2
-0.1
-0.1
-0.1
-0.4
carbon source
Carbon source D-Glucose 10 mM
-0.8
-0.1
+0.1
-0.1
+0.0
carbon source
L-Isoleucine (C)
-0.6
-0.1
-0.1
+0.1
+0.0
motility
outer cut, LB soft agar motility assay
-0.2
+0.2
-0.3
-0.0
-0.4
stress
Lomefloxacin 0.0005 mM
-0.5
+0.1
-0.3
+0.0
-0.0
carbon source
D-Glucose (C)
-0.5
-0.0
+0.0
+0.3
-0.2
carbon source
L-Proline (C)
-0.4
-0.1
-0.1
-0.1
+0.3
stress
Nickel (II) chloride 0.625 mM
+0.1
+0.2
-0.2
-0.2
-0.2
carbon source
L-Histidine (C)
-0.5
+0.1
+0.0
-0.3
+0.3
stress
Cisplatin 0.0032 mg/ml
+0.1
-0.0
-0.2
+0.2
-0.3
carbon source
pyruvate (C)
-0.3
+0.1
-0.1
+0.2
-0.2
carbon source
L-Histidine (C)
-0.3
+0.2
+0.0
-0.1
+0.3
stress
KB-half, Pseudo5 supernatant
-0.6
+0.0
+0.2
+0.2
+0.4
nitrogen source
D-Serine (N)
+0.3
-0.1
+0.2
+0.2
-0.3
anaerobic
Nitrate reduction with yeast extract
+0.1
-0.0
-0.1
+0.6
-0.1
lb
LB
+0.5
+0.1
-0.2
+0.1
+0.2
stress
nitrate 200 mM
+0.2
+0.1
-0.2
+0.3
+0.2
nitrogen source
Inosine (N)
+0.4
+0.0
+0.1
+0.2
+0.2
stress
nitrite 10 mM
+0.2
+0.2
+0.2
+0.1
+0.4
stress
methylglyoxal 0.016 vol%
+0.7
+0.1
+0.1
+0.4
-0.1
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