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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_15900 and AO356_15905 are separated by 163 nucleotides
AO356_15905 and AO356_15910 overlap by 4 nucleotides
AO356_15910 and AO356_15915 overlap by 11 nucleotides
AO356_15915 and AO356_15920 are separated by 125 nucleotides
AO356_15900: AO356_15900 - hypothetical protein, at 3,600,733 to 3,600,951
_15900
AO356_15905: AO356_15905 - transcriptional regulator, at 3,601,115 to 3,602,461
_15905
AO356_15910: AO356_15910 - histidine kinase, at 3,602,458 to 3,604,047
_15910
AO356_15915: AO356_15915 - hypothetical protein, at 3,604,037 to 3,604,270
_15915
AO356_15920: AO356_15920 - DNA transporter, at 3,604,396 to 3,605,412
_15920
Group
Condition
AO356
_15900
AO356
_15905
AO356
_15910
AO356
_15915
AO356
_15920
stress
copper (II) chloride 2.5 mM
-0.4
+0.2
-0.2
-3.7
-1.5
stress
perchlorate 75 mM
+0.4
-0.1
+0.1
-0.3
-2.5
motility
outer cut, LB soft agar motility assay
+0.5
-0.3
-0.0
-0.0
-2.3
carbon source
Ethanol (C)
-0.6
+0.1
+0.0
+0.0
-1.5
stress
Chlorite 0.04 mM
-0.3
-0.1
-0.3
-0.6
-0.6
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.1
-0.1
-0.2
-0.1
-1.5
stress
methylglyoxal 0.016 vol%
-0.1
+0.0
-0.2
-0.5
-0.9
stress
Spectinomycin 0.0125 mg/ml
-0.1
+0.0
-0.0
-0.2
-1.4
lb
LB
-0.1
+0.1
-0.0
-0.3
-1.2
carbon source
Tween 20 (C)
-0.3
-0.1
+0.1
-0.3
-0.7
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.4
-0.2
+0.1
-0.9
+0.1
survival
4C survival; 192 hrs
-0.1
+0.1
+0.0
-0.1
-1.3
motility
outer cut, LB soft agar motility assay
-0.1
-0.4
+0.3
+0.1
-1.2
carbon source
L-Arginine (C)
-0.3
+0.1
-0.0
-0.3
-0.8
stress
Aluminum chloride 5 mM
+0.3
+0.2
-0.1
-0.0
-1.7
nitrogen source
Putrescine (N)
-0.1
-0.0
-0.3
+0.2
-1.0
survival
4C survival; 1152 hrs
-0.3
+0.2
+0.2
+0.2
-1.4
carbon source
L-Lysine (C)
-0.1
-0.3
-0.3
+0.3
-0.6
survival
4C survival; 672 hrs
-0.0
+0.2
+0.4
-0.2
-1.2
carbon source
D-Trehalose (C)
-0.3
+0.2
+0.2
-0.3
-0.7
stress
nitrite 10 mM
+0.4
+0.2
-0.1
-0.3
-1.1
pH
Minimal media pH9
+0.1
-0.2
+0.0
+0.4
-1.2
pH
Minimal media pH6
+0.2
-0.0
+0.0
+0.3
-1.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-1.0
+0.0
+0.0
-0.5
+0.8
stress
Benzalkonium Chloride 0.016 mg/ml
+0.1
-0.5
-0.5
-0.8
+1.1
carbon source
D-Fructose (C)
-0.6
-0.1
+0.3
+0.2
-0.3
stress
Doxycycline hyclate 0.0001 mg/ml
+0.5
-0.2
+0.1
-0.2
-0.7
stress
nitrate 200 mM
+0.3
+0.3
+0.1
-0.3
-0.6
motility
outer cut, LB soft agar motility assay
+0.7
-0.1
-0.5
+0.3
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
+0.0
+0.3
-0.1
+0.9
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