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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_15755 and AO356_15760 are separated by 89 nucleotides
AO356_15760 and AO356_15765 are separated by 273 nucleotides
AO356_15765 and AO356_15770 are separated by 350 nucleotides
AO356_15770 and AO356_15775 are separated by 132 nucleotides
AO356_15755: AO356_15755 - hypothetical protein, at 3,570,362 to 3,572,215
_15755
AO356_15760: AO356_15760 - hypothetical protein, at 3,572,305 to 3,572,793
_15760
AO356_15765: AO356_15765 - ATP-dependent protease, at 3,573,067 to 3,575,505
_15765
AO356_15770: AO356_15770 - hypothetical protein, at 3,575,856 to 3,576,197
_15770
AO356_15775: AO356_15775 - hypothetical protein, at 3,576,330 to 3,576,818
_15775
Group
Condition
AO356
_15755
AO356
_15760
AO356
_15765
AO356
_15770
AO356
_15775
anaerobic
Nitrate reduction with yeast extract
-0.6
-0.1
+0.1
-0.6
-0.6
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.4
-0.0
-0.7
+0.1
-0.0
carbon source
m-Inositol (C)
-0.0
+0.1
-0.6
-0.3
-0.1
carbon source
Carbon source D-Mannitol 2.5 mM
-0.3
+0.1
-0.2
-0.4
-0.1
carbon source
L-Lysine (C)
+0.0
+0.2
-0.8
-0.3
+0.1
lb
LB
+0.2
-0.2
-0.0
-0.4
-0.2
carbon source
Carbon source D-Mannitol 10 mM
+0.3
+0.2
-0.3
-0.4
-0.4
carbon source
L-Lysine (C)
+0.0
+0.3
-0.8
+0.0
-0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.6
+0.1
-0.3
-0.8
-0.1
carbon source
m-Inositol (C)
+0.1
+0.2
-0.5
-0.2
+0.0
carbon source
NAG (C)
+0.1
-0.1
-0.6
+0.2
-0.2
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.3
+0.3
-0.2
-0.0
-0.2
stress
methylglyoxal 0.016 vol%
+0.3
+0.0
-0.8
+0.0
+0.2
carbon source
Putrescine (C)
-0.2
-0.0
-0.4
+0.4
-0.0
stress
Nickel (II) chloride 0.625 mM
-0.2
-0.3
+0.4
+0.2
-0.2
resistance
20 mM putrescine
-0.2
+0.4
-0.3
-0.1
-0.0
carbon source
L-Alanine (C)
+0.0
+0.1
-0.5
+0.3
-0.1
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.2
+0.3
-0.2
+0.2
-0.3
stress
Choline chloride 500 mM
-0.0
+0.0
+0.5
-0.5
-0.0
carbon source
L-Histidine (C)
-0.1
+0.3
-0.3
+0.2
+0.0
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.1
+0.4
-0.2
+0.2
-0.1
carbon source
L-Isoleucine (C)
-0.2
-0.5
+0.4
+0.5
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
-0.0
+0.3
+0.4
-0.1
motility
outer cut, LB soft agar motility assay
+0.1
+0.6
-0.2
-0.2
+0.1
carbon source
Glycerol (C)
-0.2
+0.0
+0.3
+0.3
-0.2
carbon source
Fumarate (C)
+0.0
-0.2
+1.0
-0.1
-0.4
stress
nitrite 10 mM
+0.1
+0.1
+0.1
+0.5
-0.4
carbon source
Fumarate (C)
+0.3
+0.0
+0.7
-0.1
-0.2
stress
KB-half, Pseudo5 supernatant
+0.6
+0.4
+0.4
-0.3
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.5
+0.1
+0.3
+0.5
+0.3
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