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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_15575 and AO356_15580 are separated by 271 nucleotides
AO356_15580 and AO356_15585 are separated by 103 nucleotides
AO356_15585 and AO356_15590 are separated by 165 nucleotides
AO356_15590 and AO356_15595 overlap by 1 nucleotides
AO356_15575: AO356_15575 - hypothetical protein, at 3,524,583 to 3,525,920
_15575
AO356_15580: AO356_15580 - 4-hydroxyphenylpyruvate dioxygenase, at 3,526,192 to 3,528,093
_15580
AO356_15585: AO356_15585 - TetR family transcriptional regulator, at 3,528,197 to 3,528,874
_15585
AO356_15590: AO356_15590 - shikimate dehydrogenase, at 3,529,040 to 3,529,897
_15590
AO356_15595: AO356_15595 - 3-dehydroquinate dehydratase, at 3,529,897 to 3,530,337
_15595
Group
Condition
AO356
_15575
AO356
_15580
AO356
_15585
AO356
_15590
AO356
_15595
stress
Sisomicin 0.001 mg/ml
+0.0
-0.1
-0.1
-0.7
-0.1
stress
Nickel (II) chloride 0.625 mM
-0.1
-0.0
-0.1
-0.5
-0.2
stress
Benzalkonium Chloride 0.016 mg/ml
+0.0
-0.2
-0.0
-0.2
-0.4
carbon source
Carbon source Sucrose 2.5 mM
-0.0
+0.1
-0.0
-0.7
-0.1
carbon source
L-Histidine (C)
-0.1
-0.1
-0.3
-0.4
+0.1
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.0
+0.0
-0.4
-0.4
+0.1
carbon source
L-Glutamic (C)
+0.1
+0.0
+0.0
-0.4
-0.3
carbon source
acetate (C)
+0.0
+0.1
+0.1
-0.7
+0.1
carbon source
L-Histidine (C)
+0.0
+0.0
-0.3
-0.3
+0.4
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.2
+0.1
+0.1
-0.4
-0.1
nitrogen source
D-Serine (N)
-0.0
-0.2
-0.1
+0.5
-0.1
motility
outer cut, LB soft agar motility assay
-0.2
+0.2
-0.3
+0.0
+0.4
stress
Chloramphenicol 0.005 mg/ml
-0.0
-0.1
-0.1
+0.5
-0.1
stress
copper (II) chloride 2.5 mM
+0.0
-0.0
-0.0
+0.8
-0.6
stress
Cisplatin 0.0032 mg/ml
+0.0
-0.1
-0.2
+0.6
-0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-0.0
+0.1
-0.2
+0.5
-0.1
anaerobic
Nitrate reduction with yeast extract
+0.2
-0.2
+0.2
+0.4
-0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
+0.0
-0.3
+0.4
+0.4
stress
nitrite 10 mM
+0.1
-0.0
+0.0
+0.5
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.0
+0.0
+0.6
-0.3
carbon source
NAG (C)
+0.2
+0.1
+0.1
+0.4
-0.2
carbon source
Carbon source D-Mannitol 10 mM
-0.1
+0.2
-0.0
+0.4
+0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
-0.1
+0.1
+0.3
+0.2
stress
Rifampicin 0.0024 mg/ml
+0.2
+0.1
-0.1
+0.5
-0.1
carbon source
L-Lysine (C)
+0.0
-0.0
+0.1
+0.3
+0.4
carbon source
Carbon source Sucrose 5 mM
+0.0
+0.0
+0.1
+0.6
+0.2
stress
Ceftazidime 0.2 mg/ml
-0.1
-0.0
+0.1
+1.0
-0.0
stress
Paraquat dichloride 0.0625 mg/ml
+0.0
+0.1
+0.0
+0.6
+0.3
survival
4C survival; 360 hrs
+0.1
+0.1
+0.1
+0.7
-0.0
motility
outer cut, LB soft agar motility assay
+0.2
+0.1
+0.2
+0.5
+0.2
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