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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_15075 and AO356_15080 are separated by 137 nucleotides
AO356_15080 and AO356_15085 are separated by 1 nucleotides
AO356_15085 and AO356_15090 are separated by 89 nucleotides
AO356_15090 and AO356_15095 overlap by 11 nucleotides
AO356_15075: AO356_15075 - hypothetical protein, at 3,409,376 to 3,410,533
_15075
AO356_15080: AO356_15080 - phosphatidate cytidylyltransferase, at 3,410,671 to 3,411,603
_15080
AO356_15085: AO356_15085 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 3,411,605 to 3,412,225
_15085
AO356_15090: AO356_15090 - hypothetical protein, at 3,412,315 to 3,412,770
_15090
AO356_15095: AO356_15095 - serine/threonine protein phosphatase, at 3,412,760 to 3,414,103
_15095
Group
Condition
AO356
_15075
AO356
_15080
AO356
_15085
AO356
_15090
AO356
_15095
motility
outer cut, LB soft agar motility assay
-0.5
-0.2
-0.3
-0.2
+0.1
stress
Sisomicin 0.001 mg/ml
+0.2
+0.3
-0.4
-0.4
-0.6
motility
outer cut, LB soft agar motility assay
-0.1
-0.5
-0.3
+0.3
-0.3
carbon source
Carbon source Sucrose 2.5 mM
-0.3
+0.1
-0.4
+0.1
-0.1
stress
Spectinomycin 0.0125 mg/ml
-0.2
-0.0
+0.1
-0.3
-0.2
pH
Minimal media pH9
-0.1
+0.2
-0.1
-0.3
-0.2
carbon source
L-Malic (C)
+0.2
-0.1
-0.4
+0.0
-0.2
survival
4C survival; 1152 hrs
-0.3
-0.1
-0.1
+0.2
-0.0
anaerobic
Nitrate reduction with yeast extract
-0.2
+0.4
-0.4
+0.2
-0.2
stress
Cholin acetate 40 mM
-0.2
+0.3
-0.1
-0.2
+0.1
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.1
+0.2
-0.0
-0.4
+0.2
stress
Benzalkonium Chloride 0.016 mg/ml
-0.3
+0.1
+0.1
+0.2
-0.1
nitrogen source
L-Isoleucine (N)
-0.1
+0.1
-0.3
+0.3
-0.0
carbon source
Ethanol (C)
+0.2
-0.2
-0.3
+0.0
+0.2
stress
Rifampicin 0.0016 mg/ml
-0.1
+0.1
-0.3
+0.3
+0.1
carbon source
L-Histidine (C)
+0.3
-0.0
-0.1
+0.2
-0.2
stress
acetate 40 mM
-0.2
+0.1
+0.0
+0.3
-0.2
carbon source
Tween 20 (C)
+0.1
-0.2
-0.2
+0.2
+0.3
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.1
-0.2
+0.3
+0.3
-0.0
stress
Nalidixic 0.004 mg/ml
-0.2
+0.2
-0.1
+0.3
+0.2
stress
Cobalt chloride 0.08 mM
-0.3
+0.0
+0.1
+0.2
+0.4
resistance
20 mM putrescine
+0.0
-0.1
+0.4
+0.3
-0.1
carbon source
Carbon source Sucrose 5 mM
+0.2
+0.2
+0.1
+0.2
-0.2
carbon source
L-Aspartic Acid (C)
+0.2
+0.2
-0.1
+0.1
+0.1
stress
methylglyoxal 0.016 vol%
+0.2
+0.0
-0.1
+0.2
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.5
+0.1
-0.1
+0.8
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.2
+0.4
+0.2
+0.2
-0.3
nitrogen source
Urea (N)
+0.2
-0.0
-0.0
+0.3
+0.3
motility
outer cut, LB soft agar motility assay
+0.2
-0.3
+0.2
+0.6
+0.2
stress
KB-half, Pseudo5 supernatant
+0.0
+0.2
+0.3
+0.7
+0.5
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