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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_14210 and AO356_14215 are separated by 202 nucleotides
AO356_14215 and AO356_14220 are separated by 325 nucleotides
AO356_14220 and AO356_14225 are separated by 62 nucleotides
AO356_14225 and AO356_14230 are separated by 12 nucleotides
AO356_14210: AO356_14210 - pyrroloquinoline quinone biosynthesis protein PqqC, at 3,227,833 to 3,228,585
_14210
AO356_14215: AO356_14215 - pyrroloquinoline quinone biosynthesis protein PqqB, at 3,228,788 to 3,229,699
_14215
AO356_14220: AO356_14220 - pyrroloquinoline quinone biosynthesis protein PqqF, at 3,230,025 to 3,232,457
_14220
AO356_14225: AO356_14225 - 5-aminopentanamidase (EC 3.5.1.30)
(from data)
, at 3,232,520 to 3,233,314
_14225
AO356_14230: AO356_14230 - lysine 2-monooxygenase (EC 1.13.12.2)
(from data)
, at 3,233,327 to 3,235,009
_14230
Group
Condition
AO356
_14210
AO356
_14215
AO356
_14220
AO356
_14225
AO356
_14230
carbon source
L-Lysine (C)
+0.0
-0.5
-0.4
-3.5
-4.7
carbon source
L-Lysine (C)
+0.2
-0.1
-0.4
-3.4
-5.0
carbon source
Ethanol (C)
-1.0
-1.0
-3.3
-0.1
-0.1
carbon source
Ethanol (C)
-1.0
-1.0
-2.8
+0.0
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.3
-0.5
-1.9
+0.3
+0.0
carbon source
Uridine (C)
-0.5
-0.7
-1.2
+0.0
+0.1
carbon source
NAG (C)
-0.1
+0.0
-1.3
+0.0
-0.0
carbon source
Cytidine (C)
-0.4
-0.2
-0.8
+0.1
-0.0
anaerobic
Nitrate reduction with yeast extract
-0.1
-0.9
-0.1
-0.2
+0.1
carbon source
Inosine (C)
-0.3
-0.4
-0.5
+0.2
-0.1
carbon source
Carnitine Hydrochloride (C)
-0.2
-0.5
-0.4
-0.1
+0.1
carbon source
L-Histidine (C)
-0.3
-0.3
-0.7
-0.1
+0.4
carbon source
L-Arginine (C)
-0.1
-0.0
-0.8
-0.2
+0.1
stress
sodium fluoride 6.25 mM
-0.3
-0.4
-0.1
-0.2
-0.0
nitrogen source
Adenosine (N)
-0.1
-0.2
-0.3
-0.3
-0.1
carbon source
L-Arginine (C)
-0.0
-0.2
-0.6
-0.1
-0.0
carbon source
L-Aspartic Acid (C)
-0.2
-0.5
-0.1
-0.1
+0.1
carbon source
acetate (C)
+0.0
+0.3
-0.3
-0.2
-0.6
nitrogen source
nitrite (N)
-0.3
-0.3
-0.3
+0.1
+0.0
survival
4C survival; 1152 hrs
-0.2
-0.4
-0.0
-0.3
+0.3
carbon source
D-Xylose (C)
-0.2
+0.1
-0.6
+0.1
+0.1
carbon source
L-Histidine (C)
-0.0
-0.1
-0.8
-0.1
+0.4
carbon source
acetate (C)
+0.2
+0.3
-0.2
-0.3
-0.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.2
-0.6
-0.2
+0.1
+0.1
survival
4C survival; 360 hrs
+0.0
-0.6
+0.0
-0.0
+0.3
stress
Chlorite 0.04 mM
+0.3
-0.4
+0.1
-0.2
-0.0
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.2
+0.3
-0.2
+0.2
+0.1
nitrogen source
L-tyrosine (N)
+0.2
+0.4
-0.1
+0.3
+0.0
carbon source
Putrescine (C)
+0.3
+0.2
+0.7
-0.1
-0.1
stress
copper (II) chloride 2.5 mM
+0.4
+0.1
-0.0
+0.5
+0.6
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