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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_14150 and AO356_14155 overlap by 4 nucleotides
AO356_14155 and AO356_14160 are separated by 119 nucleotides
AO356_14160 and AO356_14165 are separated by 276 nucleotides
AO356_14165 and AO356_14170 are separated by 481 nucleotides
AO356_14150: AO356_14150 - malonyl-[acyl-carrier protein] O-methyltransferase BioC, at 3,213,053 to 3,213,865
_14150
AO356_14155: AO356_14155 - dethiobiotin synthetase, at 3,213,862 to 3,214,542
_14155
AO356_14160: AO356_14160 - pyrroloquinoline quinone biosynthesis protein PqqE, at 3,214,662 to 3,214,958
_14160
AO356_14165: AO356_14165 - Acyl-CoA dehydrogenase (EC 1.3.8.7)
(from data)
, at 3,215,235 to 3,217,040
_14165
AO356_14170: AO356_14170 - hypothetical protein, at 3,217,522 to 3,218,013
_14170
Group
Condition
AO356
_14150
AO356
_14155
AO356
_14160
AO356
_14165
AO356
_14170
pH
Minimal media pH9
-3.3
-2.9
+0.3
-0.6
-0.1
carbon source
casaminos (C)
-2.8
-2.6
+0.1
-0.0
-0.1
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-2.9
-2.4
-0.1
+0.2
+0.2
carbon source
acetate (C)
-1.7
-1.7
-0.6
-0.2
-0.2
carbon source
L-Alanine (C)
-1.8
-2.3
+0.2
-0.1
-0.2
carbon source
D-Mannose (C)
-2.0
-2.0
-0.3
+0.0
-0.1
pH
Minimal media pH8
-2.3
-1.9
-0.1
+0.2
-0.1
carbon source
Tween 20 (C)
-0.3
-0.3
+0.2
-3.8
+0.0
carbon source
L-Lysine (C)
-0.7
-2.4
-0.8
+0.2
-0.2
pH
Minimal media pH7
-1.7
-2.6
+0.2
+0.1
+0.0
nitrogen source
L-tyrosine (N)
-1.9
-1.7
-0.3
-0.1
+0.2
carbon source
Tween 20 (C)
-0.3
-0.4
+0.2
-3.5
+0.1
nitrogen source
D-Alanine (N)
-1.8
-2.2
+0.1
-0.1
+0.1
pH
Minimal media pH7
-2.0
-1.8
+0.2
+0.2
-0.1
carbon source
acetate (C)
-1.3
-1.6
-0.3
-0.3
-0.0
carbon source
NAG (C)
-1.1
-2.0
-0.1
-0.0
-0.1
carbon source
L-Leucine (C)
-1.3
-1.8
-0.0
-0.1
-0.1
pH
Minimal media pH8
-1.6
-1.8
+0.2
+0.1
+0.0
nitrogen source
L-Leucine (N)
-1.5
-1.1
-0.0
-0.4
-0.1
nitrogen source
Ammonium chloride (N)
-1.4
-1.6
-0.1
+0.1
+0.1
nitrogen source
Adenosine (N)
-1.4
-1.5
+0.1
+0.2
+0.0
nitrogen source
Putrescine (N)
-1.4
-1.4
-0.0
+0.2
-0.0
carbon source
L-Lysine (C)
-1.0
-2.1
+0.1
+0.2
+0.2
motility
outer cut, LB soft agar motility assay
-0.6
-1.2
+0.5
+0.5
-0.1
motility
outer cut, LB soft agar motility assay
-0.8
-1.0
+0.9
+0.7
+0.3
motility
outer cut, LB soft agar motility assay
-0.2
-0.9
+1.4
+0.4
-0.2
motility
outer cut, LB soft agar motility assay
-0.8
-0.7
+1.6
+0.4
+0.2
stress
Lomefloxacin 0.0005 mM
+1.2
+1.2
-0.6
-0.1
+0.1
nitrogen source
D-Serine (N)
+0.7
+1.2
-0.3
+1.0
-0.2
stress
Benzalkonium Chloride 0.016 mg/ml
+1.7
+1.7
+0.6
+1.2
+0.3
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