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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_14130 and AO356_14135 are separated by 90 nucleotides
AO356_14135 and AO356_14140 are separated by 168 nucleotides
AO356_14140 and AO356_14145 overlap by 8 nucleotides
AO356_14145 and AO356_14150 overlap by 8 nucleotides
AO356_14130: AO356_14130 - amidophosphoribosyltransferase, at 3,209,103 to 3,209,843
_14130
AO356_14135: AO356_14135 - biotin synthase, at 3,209,934 to 3,210,989
_14135
AO356_14140: AO356_14140 - 8-amino-7-oxononanoate synthase, at 3,211,158 to 3,212,336
_14140
AO356_14145: AO356_14145 - transporter, at 3,212,329 to 3,213,060
_14145
AO356_14150: AO356_14150 - malonyl-[acyl-carrier protein] O-methyltransferase BioC, at 3,213,053 to 3,213,865
_14150
Group
Condition
AO356
_14130
AO356
_14135
AO356
_14140
AO356
_14145
AO356
_14150
carbon source
casaminos (C)
-0.5
-3.7
-2.8
-2.7
-2.8
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.1
-3.2
-2.7
-2.5
-2.9
pH
Minimal media pH9
+0.3
-3.4
-2.4
-2.4
-3.3
carbon source
L-Alanine (C)
+0.1
-3.9
-2.0
-2.3
-1.8
carbon source
NAG (C)
-0.1
-4.7
-2.3
-1.6
-1.1
carbon source
L-Leucine (C)
-0.0
-5.1
-1.6
-1.6
-1.3
pH
Minimal media pH7
-0.5
-3.3
-2.0
-1.8
-2.0
pH
Minimal media pH8
+0.6
-3.3
-1.9
-2.0
-2.3
pH
Minimal media pH8
-0.3
-2.9
-2.1
-1.8
-1.6
carbon source
D-Mannose (C)
+0.5
-3.8
-1.7
-1.6
-2.0
pH
Minimal media pH7
+0.1
-3.3
-2.0
-1.5
-1.7
nitrogen source
L-tyrosine (N)
-0.3
-2.9
-1.5
-1.6
-1.9
nitrogen source
D-Alanine (N)
+0.8
-3.4
-1.8
-1.9
-1.8
carbon source
L-Lysine (C)
-1.1
-2.5
-2.2
-1.4
-0.7
nitrogen source
L-Leucine (N)
-0.1
-3.2
-1.5
-1.4
-1.5
nitrogen source
Putrescine (N)
+0.1
-3.4
-1.6
-1.2
-1.4
nitrogen source
nitrite (N)
-0.3
-3.3
-1.2
-1.4
-0.9
nitrogen source
Ammonium chloride (N)
+0.1
-3.1
-1.6
-1.1
-1.4
carbon source
L-Lysine (C)
+0.5
-2.5
-2.0
-1.4
-1.0
carbon source
acetate (C)
+0.4
-2.3
-1.7
-1.4
-1.3
carbon source
acetate (C)
+0.4
-2.0
-1.4
-1.4
-1.7
nitrogen source
Cytosine (N)
-0.6
-2.9
-1.0
-0.8
-0.8
nitrogen source
Adenosine (N)
-0.0
-1.9
-1.3
-1.2
-1.4
carbon source
D-Alanine (C)
+0.2
-3.5
-0.9
-0.6
-1.1
nitrogen source
Carnitine Hydrochloride (N)
+0.3
-2.8
-1.2
-1.0
-1.2
carbon source
Carnitine Hydrochloride (C)
+0.5
-3.6
-1.1
-0.7
-0.8
carbon source
m-Inositol (C)
+0.4
-3.1
-1.5
-0.8
-0.3
carbon source
m-Inositol (C)
+0.7
-2.6
-1.1
-0.9
-0.7
nitrogen source
D-Serine (N)
+0.6
-2.0
+1.0
+1.2
+0.7
stress
Benzalkonium Chloride 0.016 mg/ml
+0.5
+1.7
+1.6
+1.4
+1.7
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