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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_14050 and AO356_14055 are separated by 101 nucleotides
AO356_14055 and AO356_14060 are separated by 206 nucleotides
AO356_14060 and AO356_14065 overlap by 4 nucleotides
AO356_14065 and AO356_14070 are separated by 213 nucleotides
AO356_14050: AO356_14050 - glutathione S-transferase, at 3,189,017 to 3,189,646
_14050
AO356_14055: AO356_14055 - hexuronate transporter, at 3,189,748 to 3,191,046
_14055
AO356_14060: AO356_14060 - hypothetical protein, at 3,191,253 to 3,191,432
_14060
AO356_14065: AO356_14065 - peptidase, at 3,191,429 to 3,192,559
_14065
AO356_14070: AO356_14070 - TonB-dependent receptor, at 3,192,773 to 3,195,211
_14070
Group
Condition
AO356
_14050
AO356
_14055
AO356
_14060
AO356
_14065
AO356
_14070
phage
P5ss-5 phage 10-1 dilution SM calcl2
-4.3
+0.2
-0.8
-0.2
+0.0
carbon source
Glycerol (C)
-2.6
-0.1
-0.3
-0.1
-0.0
temperature
LB 30C
-3.0
-0.0
+0.1
-0.0
+0.1
stress
Rifampicin 0.0016 mg/ml
-2.4
-0.0
+0.2
-0.1
+0.0
nitrogen source
Gly-Glu (N)
-1.4
-0.2
-0.3
-0.1
+0.0
stress
Benzalkonium Chloride 0.016 mg/ml
-1.2
-0.1
-0.4
-0.1
-0.1
carbon source
Ethanol (C)
-0.9
-0.1
-0.5
-0.1
-0.1
stress
Rifampicin 0.0024 mg/ml
-1.1
+0.0
-0.6
+0.1
-0.1
pH
Minimal media pH6
-1.3
-0.1
-0.4
+0.0
+0.0
nitrogen source
Inosine (N)
-1.5
-0.2
+0.1
+0.1
-0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.1
-1.4
-0.1
-0.1
carbon source
Tween 20 (C)
-1.2
+0.1
-0.1
+0.0
-0.1
carbon source
D,L-Lactate (C)
-0.3
+0.1
-0.9
-0.1
-0.1
stress
D-Cycloserine 0.1 mg/ml
-1.6
+0.1
+0.2
-0.0
+0.1
carbon source
casaminos (C)
-1.3
-0.1
+0.0
+0.2
+0.0
carbon source
L-Leucine (C)
-1.5
+0.2
+0.2
-0.1
+0.1
stress
Nickel (II) chloride 0.625 mM
-1.0
-0.2
+0.2
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
-1.4
+0.1
+0.4
-0.1
-0.1
stress
Nickel (II) chloride 0.625 mM
-1.1
-0.2
+0.5
-0.1
+0.0
motility
outer cut, LB soft agar motility assay
-1.3
+0.1
+0.5
+0.2
-0.1
stress
perchlorate 75 mM
-0.8
-0.0
+0.4
-0.3
-0.0
lb
LB
-1.4
-0.1
+0.4
+0.2
+0.1
nitrogen source
nitrite (N)
-1.4
+0.1
+0.6
+0.1
-0.0
stress
nitrite 10 mM
-1.0
+0.1
+0.3
+0.2
+0.1
survival
4C survival; 360 hrs
+0.8
-0.1
-0.4
-0.2
+0.1
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+1.1
+0.0
-0.5
-0.2
+0.0
anaerobic
Nitrate reduction with yeast extract
+1.1
+0.1
-0.5
+0.0
+0.1
stress
methylglyoxal 0.016 vol%
+1.3
+0.0
+0.3
-0.2
+0.1
stress
Vanillin 2.5 mM
+1.0
+0.1
+0.4
-0.1
+0.1
carbon source
Carbon source Sucrose 5 mM
+1.2
+0.0
+0.4
-0.1
+0.0
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