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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_14030 and AO356_14035 are separated by 70 nucleotides
AO356_14035 and AO356_14040 overlap by 1 nucleotides
AO356_14040 and AO356_14045 are separated by 220 nucleotides
AO356_14045 and AO356_14050 are separated by 197 nucleotides
AO356_14030: AO356_14030 - ATP-dependent zinc protease, at 3,184,550 to 3,185,056
_14030
AO356_14035: AO356_14035 - transcriptional regulator, at 3,185,127 to 3,185,807
_14035
AO356_14040: AO356_14040 - histidine kinase, at 3,185,807 to 3,187,225
_14040
AO356_14045: AO356_14045 - hypothetical protein, at 3,187,446 to 3,188,819
_14045
AO356_14050: AO356_14050 - glutathione S-transferase, at 3,189,017 to 3,189,646
_14050
Group
Condition
AO356
_14030
AO356
_14035
AO356
_14040
AO356
_14045
AO356
_14050
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
+0.0
-0.0
+0.0
-4.3
temperature
LB 30C
+0.1
+0.0
+0.1
-0.1
-3.0
stress
Rifampicin 0.0016 mg/ml
-0.0
+0.1
-0.1
+0.1
-2.4
carbon source
Glycerol (C)
+0.3
+0.1
+0.1
+0.1
-2.6
nitrogen source
Gly-Glu (N)
+0.2
-0.6
+0.1
+0.0
-1.4
carbon source
Ethanol (C)
-0.1
-0.3
-0.0
-0.1
-0.9
stress
D-Cycloserine 0.1 mg/ml
+0.1
+0.1
-0.0
-0.1
-1.6
lb
LB
-0.0
+0.0
-0.0
+0.1
-1.4
carbon source
L-Leucine (C)
+0.1
+0.1
-0.1
-0.0
-1.5
pH
Minimal media pH6
+0.0
-0.1
+0.0
-0.1
-1.3
carbon source
Tween 20 (C)
-0.1
+0.1
-0.1
-0.0
-1.2
carbon source
casaminos (C)
-0.1
+0.3
-0.1
+0.0
-1.3
nitrogen source
Inosine (N)
-0.1
+0.3
+0.1
+0.0
-1.5
nitrogen source
nitrite (N)
-0.0
+0.2
-0.0
+0.2
-1.4
stress
perchlorate 75 mM
-0.3
+0.2
-0.1
-0.1
-0.8
motility
outer cut, LB soft agar motility assay
-0.0
+0.0
-0.0
+0.3
-1.3
motility
outer cut, LB soft agar motility assay
+0.1
+0.1
+0.2
+0.4
-1.4
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
+0.2
+0.1
+0.1
-0.9
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.4
-1.2
-0.1
+0.1
+0.1
stress
nitrite 10 mM
+0.0
+0.5
+0.3
-0.0
-1.0
motility
outer cut, LB soft agar motility assay
-0.9
+0.2
+0.0
+0.4
+0.3
anaerobic
Nitrate reduction with yeast extract
-0.4
-0.9
+0.0
+0.3
+1.1
stress
copper (II) chloride 2.5 mM
-0.2
-0.1
+0.3
-0.1
+1.0
stress
Vanillin 2.5 mM
+0.1
+0.2
-0.1
-0.1
+1.0
stress
methylglyoxal 0.016 vol%
-0.2
+0.2
-0.0
-0.1
+1.3
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.1
+0.5
+0.2
+0.1
+0.6
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.4
+0.4
+0.2
+0.1
+1.1
carbon source
Carbon source Sucrose 5 mM
-0.0
+0.3
-0.0
+0.0
+1.2
nitrogen source
D-Serine (N)
+0.0
+0.6
+0.3
+0.2
+0.3
carbon source
D-Ribose (C)
+0.0
+0.2
+0.1
+0.0
+1.2
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