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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_14000 and AO356_14005 are separated by 68 nucleotides
AO356_14005 and AO356_14010 are separated by 311 nucleotides
AO356_14010 and AO356_14015 are separated by 106 nucleotides
AO356_14015 and AO356_14020 are separated by 303 nucleotides
AO356_14000: AO356_14000 - aldehyde dismutase, at 3,179,682 to 3,180,881
_14000
AO356_14005: AO356_14005 - cold-shock protein, at 3,180,950 to 3,181,162
_14005
AO356_14010: AO356_14010 - hypothetical protein, at 3,181,474 to 3,182,049
_14010
AO356_14015: AO356_14015 - hypothetical protein, at 3,182,156 to 3,182,578
_14015
AO356_14020: AO356_14020 - hypothetical protein, at 3,182,882 to 3,183,451
_14020
Group
Condition
AO356
_14000
AO356
_14005
AO356
_14010
AO356
_14015
AO356
_14020
motility
outer cut, LB soft agar motility assay
+0.2
-0.1
+0.1
+0.2
-3.4
motility
outer cut, LB soft agar motility assay
+0.2
-0.0
-0.1
-0.3
-1.6
carbon source
L-Malic (C)
-0.1
-0.1
-0.4
-0.1
-0.7
survival
4C survival; 672 hrs
-0.0
-0.2
-0.3
-0.1
-0.8
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.1
-0.1
-0.1
-0.1
-1.1
carbon source
succinate (C)
-0.2
-0.1
+0.0
+0.1
-1.0
carbon source
D-Fructose (C)
-0.2
+0.1
+0.1
+0.3
-1.5
carbon source
L-Lactate (C)
-0.2
-0.1
-0.2
+0.1
-0.7
nitrogen source
Adenine (N)
-0.2
-0.3
+0.1
+0.2
-0.9
stress
Doxycycline hyclate 0.0001 mg/ml
-0.0
-0.1
+0.3
-0.0
-1.3
carbon source
m-Inositol (C)
+0.0
-0.2
+0.0
+0.2
-1.1
nitrogen source
D-Serine (N)
-0.0
-0.2
+0.1
+0.3
-1.0
motility
outer cut, LB soft agar motility assay
-0.4
+0.4
-0.3
+0.1
-0.5
carbon source
L-Proline (C)
+0.1
-0.2
-0.0
+0.2
-0.8
stress
1-ethyl-3-methylimidazolium lysine 10 mM
+0.2
+0.2
-0.1
-0.1
-0.9
stress
KB-half, Pseudo5 supernatant
+0.1
+0.3
-0.5
+0.4
-0.9
stress
acetate 40 mM
+0.2
+0.1
-0.3
+0.1
-0.6
stress
Cholin acetate 20 mM
+0.2
+0.1
-0.3
+0.3
-0.8
carbon source
Carbon source Sucrose 5 mM
+0.0
+0.3
-0.2
+0.2
-0.8
carbon source
Carnitine Hydrochloride (C)
-0.8
-0.1
-0.1
+0.3
+0.3
carbon source
Tween 20 (C)
-0.2
-0.3
-0.1
+0.2
+0.5
stress
Chlorite 0.08 mM
+0.4
-0.4
-0.3
+0.2
+0.4
anaerobic
Nitrate reduction with yeast extract
-0.0
-0.3
+0.6
+0.2
-0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.1
+0.2
-0.3
+0.2
+0.4
stress
Choline chloride 500 mM
+0.0
+0.1
-0.4
+0.4
+0.5
stress
Sisomicin 0.001 mg/ml
+0.0
-0.2
+0.1
-0.0
+1.1
stress
nitrate 200 mM
+0.1
-0.3
+0.3
-0.2
+1.2
nitrogen source
Adenosine (N)
-0.1
+0.0
+0.0
+0.5
+0.7
carbon source
Carbon source Sucrose 2.5 mM
+0.0
+0.3
-0.1
+0.1
+0.8
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.0
-0.3
+0.4
+0.3
+0.9
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