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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_13920 and AO356_13925 are separated by 320 nucleotides
AO356_13925 and AO356_13930 are separated by 1102 nucleotides
AO356_13930 and AO356_13935 are separated by 162 nucleotides
AO356_13935 and AO356_13940 are separated by 27 nucleotides
AO356_13920: AO356_13920 - electron transfer flavoprotein subunit beta, at 3,157,113 to 3,157,883
_13920
AO356_13925: AO356_13925 - acetyltransferase, at 3,158,204 to 3,158,770
_13925
AO356_13930: AO356_13930 - choline dehydrogenase, at 3,159,873 to 3,163,325
_13930
AO356_13935: AO356_13935 - hypothetical protein, at 3,163,488 to 3,165,356
_13935
AO356_13940: AO356_13940 - metallophosphoesterase, at 3,165,384 to 3,166,628
_13940
Group
Condition
AO356
_13920
AO356
_13925
AO356
_13930
AO356
_13935
AO356
_13940
carbon source
Carnitine Hydrochloride (C)
-6.5
-0.0
-0.0
-0.0
+0.0
nitrogen source
Carnitine Hydrochloride (N)
-3.4
-0.1
+0.1
+0.1
-0.1
carbon source
L-Lysine (C)
-2.4
+0.2
-0.2
-0.2
+0.1
carbon source
L-Lysine (C)
-2.7
+0.1
+0.1
+0.2
+0.0
carbon source
L-Isoleucine (C)
-1.0
+0.0
-0.1
-0.1
-0.1
carbon source
L-Histidine (C)
-1.1
+0.0
+0.0
+0.0
-0.2
carbon source
L-Histidine (C)
-1.4
+0.0
+0.0
+0.1
+0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.7
-0.1
+0.0
-0.1
-0.3
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.8
-0.3
-0.1
-0.1
+0.1
carbon source
m-Inositol (C)
-0.9
-0.0
+0.0
-0.1
-0.0
carbon source
D-Lactate (C)
-0.7
-0.2
+0.0
-0.0
-0.1
carbon source
L-Asparagine (C)
-0.9
-0.0
+0.0
+0.0
+0.0
temperature
LB 10C
-0.6
-0.2
-0.2
+0.1
+0.1
pH
Minimal media pH6
-1.1
+0.0
+0.0
+0.1
+0.2
carbon source
L-Asparagine (C)
-0.7
+0.1
-0.0
+0.1
-0.1
temperature
LB 20C
-0.7
+0.1
+0.0
+0.1
-0.1
carbon source
Carbon source D-Mannitol 10 mM
-0.7
+0.0
+0.2
+0.1
-0.1
nitrogen source
L-tyrosine (N)
-0.8
+0.0
+0.2
-0.0
+0.1
nitrogen source
L-Phenylalanine (N)
-0.6
-0.2
+0.2
+0.0
+0.1
carbon source
Carbon source Sucrose 10 mM
-0.6
+0.2
+0.1
+0.0
-0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-0.7
+0.2
-0.1
+0.0
+0.2
survival
4C survival; 192 hrs
-0.5
+0.1
-0.1
+0.2
-0.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.5
-0.4
-0.1
-0.0
-0.1
survival
4C survival; 1152 hrs
+0.6
-0.1
-0.2
-0.0
-0.3
survival
4C survival; 360 hrs
+0.6
-0.3
-0.3
+0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.8
-0.2
-0.1
-0.1
-0.1
stress
Lomefloxacin 0.0005 mM
+0.6
-0.2
-0.0
-0.1
+0.0
motility
outer cut, LB soft agar motility assay
+0.8
-0.0
-0.1
-0.0
+0.1
stress
acetate 40 mM
+1.0
-0.2
-0.1
+0.0
+0.1
stress
KB-half, Pseudo5 supernatant
+0.7
-0.1
+0.0
-0.0
+0.2
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