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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_13780 and AO356_13785 overlap by 1 nucleotides
AO356_13785 and AO356_13790 are separated by 370 nucleotides
AO356_13790 and AO356_13795 are separated by 147 nucleotides
AO356_13795 and AO356_13800 are separated by 79 nucleotides
AO356_13780: AO356_13780 - Zn-dependent protease, at 3,125,105 to 3,126,442
_13780
AO356_13785: AO356_13785 - peptidase C69, at 3,126,442 to 3,127,884
_13785
AO356_13790: AO356_13790 - choline dehydrogenase, at 3,128,255 to 3,129,958
_13790
AO356_13795: AO356_13795 - betaine-aldehyde dehydrogenase, at 3,130,106 to 3,131,578
_13795
AO356_13800: AO356_13800 - transcriptional repressor BetI, at 3,131,658 to 3,132,278
_13800
Group
Condition
AO356
_13780
AO356
_13785
AO356
_13790
AO356
_13795
AO356
_13800
stress
Choline chloride 500 mM
-0.1
-0.3
-2.2
-0.5
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
-0.0
-0.6
-0.5
-0.8
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.1
-0.6
-0.5
-0.7
survival
4C survival; 1152 hrs
-0.2
-0.2
-0.3
-0.5
-0.4
stress
Choline chloride 300 mM
+0.1
-0.1
-1.0
-0.7
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.1
+0.3
-0.5
-0.5
-0.7
motility
outer cut, LB soft agar motility assay
-0.3
+0.1
-0.1
-0.6
-0.3
motility
outer cut, LB soft agar motility assay
-0.0
-0.0
-0.2
-0.7
-0.3
stress
Nalidixic 0.004 mg/ml
-0.1
-0.1
-0.2
+0.2
-0.5
survival
4C survival; 360 hrs
-0.3
+0.1
+0.1
-0.1
-0.4
carbon source
L-Lysine (C)
-0.2
-0.1
+0.1
+0.2
-0.6
nitrogen source
Urea (N)
-0.3
-0.4
-0.1
-0.1
+0.3
stress
Sisomicin 0.001 mg/ml
-0.0
-0.2
-0.1
-0.4
+0.3
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.0
-0.3
-0.1
+0.3
-0.3
stress
Paraquat dichloride 0.0625 mg/ml
-0.0
+0.1
-0.0
+0.4
-0.7
stress
Paraquat dichloride 0.0625 mg/ml
-0.2
-0.0
+0.0
+0.5
-0.5
carbon source
L-Lysine (C)
+0.1
+0.0
+0.3
+0.1
-0.6
nitrogen source
Carnitine Hydrochloride (N)
-0.1
+0.0
-0.5
+0.1
+0.5
stress
Lomefloxacin 0.0005 mM
-0.1
+0.1
-0.5
+0.6
+0.3
stress
Chlorite 0.08 mM
+0.1
-0.1
-0.3
+0.5
+0.2
carbon source
D-Xylose (C)
+0.2
+0.3
+0.2
+0.1
-0.3
stress
methylglyoxal 0.016 vol%
+0.1
+0.0
+0.3
+0.6
-0.4
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
+0.1
-0.2
+0.5
-0.0
carbon source
Carnitine Hydrochloride (C)
+0.3
-0.1
-0.8
+0.1
+1.2
anaerobic
Nitrate reduction with yeast extract
+0.3
+0.5
-0.2
+0.1
+0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-0.1
-0.1
+0.7
+0.7
-0.2
stress
1-ethyl-3-methylimidazolium lysine 10 mM
+0.3
+0.2
+0.2
+0.2
+0.2
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.0
+0.2
+0.2
+0.5
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.6
+0.3
+0.0
+0.2
+0.0
stress
Cholin acetate 40 mM
-0.0
+0.0
+1.2
+0.8
+0.2
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