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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_13640 and AO356_13645 are separated by 153 nucleotides
AO356_13645 and AO356_13650 are separated by 125 nucleotides
AO356_13650 and AO356_13655 are separated by 48 nucleotides
AO356_13655 and AO356_13660 are separated by 90 nucleotides
AO356_13640: AO356_13640 - hypothetical protein, at 3,094,157 to 3,094,540
_13640
AO356_13645: AO356_13645 - transglycosylase, at 3,094,694 to 3,095,881
_13645
AO356_13650: AO356_13650 - cytochrome C, at 3,096,007 to 3,096,456
_13650
AO356_13655: AO356_13655 - hypothetical protein, at 3,096,505 to 3,096,900
_13655
AO356_13660: AO356_13660 - aromatic ring-opening dioxygenase LigA, at 3,096,991 to 3,098,664
_13660
Group
Condition
AO356
_13640
AO356
_13645
AO356
_13650
AO356
_13655
AO356
_13660
stress
Benzalkonium Chloride 0.016 mg/ml
-0.1
-0.4
-0.3
-5.2
+0.4
stress
Cholin acetate 40 mM
-0.0
-0.4
-0.9
-1.4
-0.1
stress
1-ethyl-3-methylimidazolium lysine 10 mM
+0.1
-1.1
-0.5
-0.6
+0.0
motility
outer cut, LB soft agar motility assay
-0.1
-0.1
-0.5
-1.4
+0.3
stress
Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.3
-0.2
-1.8
+0.3
stress
Rifampicin 0.0024 mg/ml
-0.0
-1.6
-0.2
-0.3
+0.2
stress
Nickel (II) chloride 0.625 mM
-0.0
-0.8
+0.1
-1.0
+0.2
motility
outer cut, LB soft agar motility assay
+0.0
+0.2
-0.3
-1.6
+0.1
stress
methylglyoxal 0.016 vol%
-0.3
-0.2
+0.1
-0.9
-0.2
stress
Chlorite 0.08 mM
-0.2
-0.2
-0.2
-1.0
+0.2
stress
Lomefloxacin 0.0005 mM
-0.1
-0.2
-0.1
-1.1
-0.0
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.0
-0.1
-0.1
-1.3
+0.1
stress
Nickel (II) chloride 0.625 mM
+0.0
-0.6
+0.0
-1.0
+0.2
stress
Benzethonium chloride 0.025 mM
+0.1
-0.4
-0.4
-0.8
+0.1
stress
perchlorate 75 mM
-0.3
-0.5
-0.0
-0.6
+0.2
stress
Cobalt chloride 0.08 mM
+0.1
-0.6
-0.3
-0.3
+0.1
motility
outer cut, LB soft agar motility assay
+0.2
+0.2
-0.6
-0.9
+0.1
lb
LB
+0.0
-0.1
-0.0
-0.9
+0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.1
-0.1
-0.5
-0.6
+0.3
stress
Benzalkonium Chloride 0.008 mg/ml
+0.2
-0.2
+0.1
-1.0
+0.4
nitrogen source
D-Serine (N)
+0.2
-0.6
+0.1
+0.9
+0.0
stress
Aluminum chloride 5 mM
-0.3
+0.1
+0.2
+0.9
-0.1
carbon source
Ethanol (C)
-0.1
+0.1
+0.4
+0.7
+0.0
carbon source
L-Lysine (C)
+0.2
+0.2
+0.2
+0.7
-0.2
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.0
+0.1
+0.1
+1.0
-0.2
carbon source
L-Lysine (C)
+0.0
-0.0
-0.1
+1.3
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.4
+0.4
-0.0
+0.6
+0.5
stress
Sisomicin 0.001 mg/ml
+0.1
+0.2
+0.3
+1.9
-0.2
stress
KB-half, Pseudo5 supernatant
+0.3
+0.2
+0.5
+0.8
+0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.4
+0.2
+0.5
+0.8
+0.5
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