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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_13625 and AO356_13630 are separated by 408 nucleotides
AO356_13630 and AO356_13635 are separated by 300 nucleotides
AO356_13635 and AO356_13640 are separated by 38 nucleotides
AO356_13640 and AO356_13645 are separated by 153 nucleotides
AO356_13625: AO356_13625 - exou protein, at 3,089,634 to 3,091,415
_13625
AO356_13630: AO356_13630 - arabinose transporter permease, at 3,091,824 to 3,092,984
_13630
AO356_13635: AO356_13635 - transporter, at 3,093,285 to 3,094,118
_13635
AO356_13640: AO356_13640 - hypothetical protein, at 3,094,157 to 3,094,540
_13640
AO356_13645: AO356_13645 - transglycosylase, at 3,094,694 to 3,095,881
_13645
Group
Condition
AO356
_13625
AO356
_13630
AO356
_13635
AO356
_13640
AO356
_13645
stress
Rifampicin 0.0024 mg/ml
-0.2
+0.0
-0.1
-0.0
-1.6
stress
perchlorate 75 mM
-0.2
-0.0
-0.1
-0.3
-0.5
stress
Chlorite 0.08 mM
-0.2
-0.1
-0.2
-0.2
-0.2
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.0
+0.1
+0.0
+0.1
-1.1
stress
Lomefloxacin 0.0005 mM
+0.0
-0.1
-0.5
-0.1
-0.2
stress
Bacitracin 2 mg/ml
-0.1
-0.1
+0.1
-0.1
-0.6
stress
Cholin acetate 40 mM
-0.1
-0.3
+0.0
-0.0
-0.4
stress
methylglyoxal 0.016 vol%
+0.0
-0.2
-0.0
-0.3
-0.2
stress
Nickel (II) chloride 0.625 mM
+0.0
+0.1
-0.0
-0.0
-0.8
stress
Ceftazidime 0.2 mg/ml
-0.2
+0.0
+0.0
+0.0
-0.6
stress
Nickel (II) chloride 0.625 mM
+0.0
-0.0
-0.0
+0.0
-0.6
stress
Cobalt chloride 0.08 mM
-0.0
-0.0
-0.1
+0.2
-0.7
stress
Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.2
-0.0
+0.1
-0.3
stress
Cobalt chloride 0.08 mM
-0.1
-0.1
+0.1
+0.1
-0.6
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.0
-0.1
-0.4
+0.2
-0.1
motility
outer cut, LB soft agar motility assay
-0.0
-0.3
-0.2
+0.0
+0.2
stress
Spectinomycin 0.0125 mg/ml
-0.0
+0.1
-0.1
+0.1
-0.5
nitrogen source
D-Serine (N)
+0.2
-0.1
-0.0
+0.2
-0.6
pH
Minimal media pH9
+0.0
-0.0
+0.1
+0.3
-0.4
anaerobic
Nitrate reduction with yeast extract
-0.2
+0.5
-0.0
-0.1
-0.1
stress
Aluminum chloride 5 mM
-0.1
+0.2
+0.1
-0.3
+0.1
stress
copper (II) chloride 2.5 mM
+0.3
+0.0
+0.2
-0.3
+0.1
motility
outer cut, LB soft agar motility assay
-0.1
-0.2
+0.1
+0.2
+0.2
temperature
LB 30C
+0.1
+0.2
+0.2
-0.2
-0.1
carbon source
L-Isoleucine (C)
-0.0
+0.3
+0.2
-0.1
-0.1
nitrogen source
L-tyrosine (N)
+0.1
-0.1
+0.3
+0.3
-0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.0
+0.1
-0.1
+0.4
+0.4
carbon source
Cytidine (C)
+0.2
+0.1
+0.3
+0.2
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
+0.4
+0.1
+0.4
+0.2
stress
KB-half, Pseudo5 supernatant
-0.2
+0.6
+0.2
+0.3
+0.2
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