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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_13420 and AO356_13425 are separated by 35 nucleotides
AO356_13425 and AO356_13430 are separated by 54 nucleotides
AO356_13430 and AO356_13435 are separated by 162 nucleotides
AO356_13435 and AO356_13440 are separated by 249 nucleotides
AO356_13420: AO356_13420 - pyrroline-5-carboxylate reductase, at 3,044,133 to 3,044,951
_13420
AO356_13425: AO356_13425 - hypothetical protein, at 3,044,987 to 3,045,673
_13425
AO356_13430: AO356_13430 - twitching motility protein PilT, at 3,045,728 to 3,046,762
_13430
AO356_13435: AO356_13435 - peptidase P60, at 3,046,925 to 3,047,536
_13435
AO356_13440: AO356_13440 - hypothetical protein, at 3,047,786 to 3,048,214
_13440
Group
Condition
AO356
_13420
AO356
_13425
AO356
_13430
AO356
_13435
AO356
_13440
nitrogen source
D-Serine (N)
N.D.
-2.4
+0.2
-0.3
-0.0
stress
KB-half, Pseudo5 supernatant
N.D.
-1.5
-0.2
-0.5
-0.1
carbon source
L-Lysine (C)
N.D.
-1.3
-0.5
-0.3
+0.0
carbon source
D-Lactate (C)
N.D.
-1.8
+0.1
+0.0
-0.1
carbon source
acetate (C)
N.D.
-1.7
+0.2
+0.2
-0.4
carbon source
Cytidine (C)
N.D.
-1.2
+0.0
-0.1
-0.1
survival
4C survival; 1152 hrs
N.D.
-0.5
-0.1
-0.4
-0.2
stress
nitrite 10 mM
N.D.
-1.4
+0.4
-0.1
-0.0
carbon source
Glycerol (C)
N.D.
-1.1
+0.0
-0.1
-0.0
lb
LB
N.D.
-1.0
+0.1
-0.1
-0.1
stress
Spectinomycin 0.0125 mg/ml
N.D.
-0.7
-0.1
-0.2
-0.1
nitrogen source
Adenosine (N)
N.D.
-1.0
+0.0
-0.0
-0.1
carbon source
L-Malic (C)
N.D.
-1.2
+0.0
-0.0
+0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
N.D.
-1.2
+0.1
+0.1
-0.1
carbon source
D-Ribose (C)
N.D.
-1.1
+0.0
+0.1
-0.1
stress
Chlorite 0.08 mM
N.D.
-0.8
+0.0
-0.2
-0.1
carbon source
Carnitine Hydrochloride (C)
N.D.
-1.1
+0.1
+0.1
-0.0
anaerobic
Nitrate reduction with yeast extract
N.D.
-1.2
-0.1
+0.4
-0.1
stress
perchlorate 75 mM
N.D.
-0.4
-0.4
+0.3
-0.2
stress
Spectinomycin 0.025 mg/ml
N.D.
-0.8
-0.1
+0.0
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
N.D.
+0.8
-0.4
-0.6
-0.3
carbon source
succinate (C)
N.D.
-0.5
+0.3
+0.1
-0.2
stress
nitrate 200 mM
N.D.
-0.3
+0.1
-0.2
+0.4
stress
Benzalkonium Chloride 0.016 mg/ml
N.D.
+0.6
-0.2
-0.2
+0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
N.D.
+0.8
-0.3
-0.1
+0.1
stress
Nickel (II) chloride 0.625 mM
N.D.
+0.8
+0.2
-0.1
-0.2
stress
Choline chloride 500 mM
N.D.
+1.0
+0.1
+0.3
-0.1
stress
Nalidixic 0.004 mg/ml
N.D.
+1.6
-0.0
-0.1
-0.0
carbon source
Putrescine (C)
N.D.
+1.0
+0.1
+0.3
+0.0
stress
Lomefloxacin 0.0005 mM
N.D.
+2.2
+0.3
+0.5
+0.0
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AO356_13430
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