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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_13195 and AO356_13200 are separated by 108 nucleotides
AO356_13200 and AO356_13205 are separated by 133 nucleotides
AO356_13205 and AO356_13210 are separated by 1427 nucleotides
AO356_13210 and AO356_13215 are separated by 140 nucleotides
AO356_13195: AO356_13195 - thiol-disulfide isomerase, at 3,000,791 to 3,001,378
_13195
AO356_13200: AO356_13200 - alpha/beta hydrolase, at 3,001,487 to 3,002,434
_13200
AO356_13205: AO356_13205 - hypothetical protein, at 3,002,568 to 3,002,747
_13205
AO356_13210: AO356_13210 - hypothetical protein, at 3,004,175 to 3,004,918
_13210
AO356_13215: AO356_13215 - 2OG-Fe(II) oxygenase, at 3,005,059 to 3,005,691
_13215
Group
Condition
AO356
_13195
AO356
_13200
AO356
_13205
AO356
_13210
AO356
_13215
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.2
-0.5
-0.7
-1.6
-0.3
anaerobic
Nitrate reduction with yeast extract
-0.0
-0.0
-2.5
-1.2
+0.6
survival
4C survival; 1152 hrs
-1.6
-0.5
-0.2
-0.2
+0.0
survival
4C survival; 192 hrs
-1.4
+0.1
-0.2
-0.6
-0.1
survival
4C survival; 360 hrs
-1.7
-0.3
+0.4
-0.3
+0.0
survival
4C survival; 672 hrs
-1.5
-0.3
+0.4
-0.5
+0.2
motility
outer cut, LB soft agar motility assay
+0.0
+0.0
-1.2
-0.1
-0.2
temperature
LB 30C
-1.3
+0.1
-0.1
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.1
+0.1
-0.4
-0.9
+0.2
stress
copper (II) chloride 2.5 mM
-0.6
+0.3
+0.2
-1.2
+0.5
stress
Chlorite 0.04 mM
-0.1
-0.1
+0.4
-0.9
-0.0
pH
Minimal media pH9
+0.3
+0.0
+0.2
-1.3
+0.1
temperature
LB 30C
-1.0
+0.2
+0.5
-0.3
+0.1
temperature
LB 20C
-0.9
+0.2
+0.2
-0.2
+0.3
stress
Chlorite 0.08 mM
+0.1
-0.5
+0.7
-0.6
-0.2
carbon source
acetate (C)
+0.9
-0.3
-0.3
-0.4
-0.1
carbon source
acetate (C)
+1.0
-0.5
-0.0
-0.6
+0.0
motility
outer cut, LB soft agar motility assay
-0.3
+0.1
+0.6
-0.3
+0.2
stress
Bacitracin 2 mg/ml
+0.2
-0.3
+0.1
+1.0
-0.0
stress
Ceftazidime 0.2 mg/ml
+0.1
-0.2
+0.7
+0.8
-0.1
nitrogen source
D-Serine (N)
+0.0
-0.1
+0.4
+0.9
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
-0.0
+0.7
+0.5
+0.4
stress
Cisplatin 0.0032 mg/ml
+0.5
-0.0
-0.1
+0.9
+0.1
stress
Cobalt chloride 0.08 mM
+0.8
+0.2
+0.3
+0.2
-0.1
stress
Cobalt chloride 0.08 mM
+1.1
+0.3
-0.0
+0.7
-0.4
stress
Benzalkonium Chloride 0.008 mg/ml
+0.3
+0.2
+0.1
+1.1
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
+0.3
-0.2
+0.1
+1.6
-0.0
stress
Cisplatin 0.0032 mg/ml
+0.5
+0.0
+0.4
+1.1
-0.1
stress
Rifampicin 0.0024 mg/ml
+0.1
-0.0
+0.2
+2.2
-0.2
stress
Benzalkonium Chloride 0.016 mg/ml
+0.5
-0.0
-0.6
+2.4
+0.1
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