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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_12890 and AO356_12895 are separated by 17 nucleotides
AO356_12895 and AO356_12900 are separated by 78 nucleotides
AO356_12900 and AO356_12905 are separated by 199 nucleotides
AO356_12905 and AO356_12910 overlap by 14 nucleotides
AO356_12890: AO356_12890 - delta-aminolevulinic acid dehydratase, at 2,934,145 to 2,935,158
_12890
AO356_12895: AO356_12895 - polyphosphate kinase, at 2,935,176 to 2,937,392
_12895
AO356_12900: AO356_12900 - exopolyphosphatase, at 2,937,471 to 2,938,973
_12900
AO356_12905: AO356_12905 - amino acid ABC transporter ATP-binding protein, at 2,939,173 to 2,939,910
_12905
AO356_12910: AO356_12910 - amino acid ABC transporter permease, at 2,939,897 to 2,940,547
_12910
Group
Condition
AO356
_12890
AO356
_12895
AO356
_12900
AO356
_12905
AO356
_12910
carbon source
L-Isoleucine (C)
-0.4
-4.2
-0.8
-0.3
-0.1
carbon source
L-Lysine (C)
-0.5
-3.5
-0.1
-0.5
-0.4
carbon source
NAG (C)
-0.1
-5.2
+0.4
+0.0
-0.0
pH
Minimal media pH9
-0.0
-4.3
-1.1
+0.5
+0.0
carbon source
L-Leucine (C)
-0.2
-3.8
-0.3
+0.3
-0.1
carbon source
acetate (C)
-0.3
-3.0
-0.6
+0.1
-0.1
carbon source
D-Lactate (C)
-0.7
-3.4
-0.1
+0.2
-0.0
carbon source
L-Histidine (C)
-0.0
-2.9
-0.5
-0.1
-0.2
nitrogen source
L-Isoleucine (N)
-0.1
-2.8
-0.7
-0.2
+0.2
carbon source
D-Lactate (C)
-0.4
-2.9
-0.6
+0.3
+0.1
carbon source
L-Alanine (C)
-0.3
-3.2
-0.6
+0.5
+0.1
carbon source
Tween 20 (C)
-0.0
-2.1
-1.5
+0.1
-0.0
carbon source
L-Lysine (C)
-0.4
-3.4
+0.3
+0.1
+0.1
nitrogen source
L-Leucine (N)
+0.0
-1.9
-1.2
-0.1
-0.0
carbon source
D-Alanine (C)
-0.3
-3.3
+0.1
+0.3
+0.1
carbon source
L-Histidine (C)
+0.0
-2.7
-0.5
+0.2
+0.0
carbon source
L-Asparagine (C)
-0.4
-2.8
+0.3
-0.2
+0.2
carbon source
L-Asparagine (C)
-0.5
-2.8
+0.7
+0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
+0.6
-2.5
-0.4
+0.1
carbon source
L-Glutamine (C)
-0.3
-2.3
+0.3
+0.5
+0.1
carbon source
Glycerol (C)
-0.1
+1.0
-1.9
-0.3
+0.0
pH
Minimal media pH7
+0.3
+0.7
-2.4
+0.1
+0.1
pH
Minimal media pH7
+0.2
+0.6
-2.1
+0.5
-0.3
stress
Choline chloride 500 mM
-0.3
-1.3
+1.0
+0.5
-0.3
stress
methylglyoxal 0.016 vol%
-0.4
-1.3
+0.7
+0.8
-0.1
survival
4C survival; 192 hrs
+0.4
+1.7
-1.9
-0.2
+0.1
stress
Lomefloxacin 0.0005 mM
-0.1
-1.4
+1.1
+0.9
+0.0
carbon source
D-Gluconic Acid (C)
+0.5
+2.5
-1.5
+0.2
-0.0
carbon source
D-Gluconic Acid (C)
+0.6
+2.6
-1.2
-0.1
+0.1
carbon source
Fumarate (C)
+0.2
+2.0
-0.3
+0.6
+0.2
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