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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_12875 and AO356_12880 are separated by 123 nucleotides
AO356_12880 and AO356_12885 overlap by 20 nucleotides
AO356_12885 and AO356_12890 are separated by 204 nucleotides
AO356_12890 and AO356_12895 are separated by 17 nucleotides
AO356_12875: AO356_12875 - isoprenoid biosynthesis protein, at 2,931,309 to 2,931,977
_12875
AO356_12880: AO356_12880 - hypothetical protein, at 2,932,101 to 2,933,336
_12880
AO356_12885: AO356_12885 - hypothetical protein, at 2,933,317 to 2,933,940
_12885
AO356_12890: AO356_12890 - delta-aminolevulinic acid dehydratase, at 2,934,145 to 2,935,158
_12890
AO356_12895: AO356_12895 - polyphosphate kinase, at 2,935,176 to 2,937,392
_12895
Group
Condition
AO356
_12875
AO356
_12880
AO356
_12885
AO356
_12890
AO356
_12895
carbon source
L-Asparagine (C)
-0.1
-0.1
-2.0
-0.5
-2.8
carbon source
NAG (C)
-0.1
-0.0
+0.3
-0.1
-5.2
carbon source
D-Lactate (C)
+0.2
-0.1
-1.0
-0.7
-3.4
carbon source
L-Asparagine (C)
+0.1
-0.1
-1.7
-0.4
-2.8
carbon source
L-Leucine (C)
-0.1
-0.1
-0.4
-0.2
-3.8
carbon source
L-Lysine (C)
+0.1
-0.2
-0.4
-0.4
-3.4
carbon source
L-Lysine (C)
-0.0
-0.1
-0.1
-0.5
-3.5
carbon source
L-Alanine (C)
-0.1
+0.1
-0.6
-0.3
-3.2
carbon source
D-Alanine (C)
-0.1
-0.0
-0.4
-0.3
-3.3
carbon source
L-Isoleucine (C)
-0.2
-0.0
+0.6
-0.4
-4.2
stress
Cholin acetate 40 mM
-0.1
-0.4
-1.7
-0.2
-1.6
pH
Minimal media pH9
-0.1
+0.1
+0.3
-0.0
-4.3
carbon source
D-Lactate (C)
+0.1
-0.0
-0.6
-0.4
-2.9
carbon source
L-Histidine (C)
-0.1
-0.1
-0.6
-0.0
-2.9
carbon source
acetate (C)
-0.1
-0.0
-0.1
-0.3
-3.0
carbon source
L-Glutamine (C)
-0.1
+0.1
-0.7
-0.3
-2.3
carbon source
L-Arginine (C)
-0.1
+0.0
-0.2
-0.1
-2.8
carbon source
L-Glutamine (C)
+0.0
+0.0
-0.7
-0.3
-2.3
nitrogen source
L-Isoleucine (N)
-0.1
-0.0
+0.2
-0.1
-2.8
carbon source
Cytidine (C)
-0.2
+0.1
+0.3
-0.3
-2.3
motility
outer cut, LB soft agar motility assay
-0.1
-0.1
-2.8
+0.2
+0.6
motility
outer cut, LB soft agar motility assay
+0.2
-0.1
-2.2
-0.2
+0.4
motility
outer cut, LB soft agar motility assay
-0.3
+0.0
-2.0
-0.5
+0.8
carbon source
D-Xylose (C)
-0.2
-0.1
+1.0
-0.1
-2.4
carbon source
D-Xylose (C)
-0.2
-0.1
+0.9
+0.1
-2.3
stress
Lomefloxacin 0.0005 mM
-0.1
+0.1
+1.7
-0.1
-1.4
survival
4C survival; 192 hrs
+0.3
+0.1
-1.0
+0.4
+1.7
carbon source
D-Gluconic Acid (C)
-0.1
+0.0
-0.2
+0.5
+2.5
carbon source
D-Gluconic Acid (C)
+0.1
+0.0
-0.3
+0.6
+2.6
stress
Sisomicin 0.001 mg/ml
-0.1
+0.4
+1.6
+1.1
+1.0
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