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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_12800 and AO356_12805 are separated by 304 nucleotides
AO356_12805 and AO356_12810 are separated by 175 nucleotides
AO356_12810 and AO356_12815 are separated by 70 nucleotides
AO356_12815 and AO356_12820 are separated by 191 nucleotides
AO356_12800: AO356_12800 - heme biosynthesis protein HemY, at 2,916,448 to 2,917,695
_12800
AO356_12805: AO356_12805 - disulfide bond formation protein B, at 2,918,000 to 2,918,542
_12805
AO356_12810: AO356_12810 - transcriptional regulator, at 2,918,718 to 2,919,176
_12810
AO356_12815: AO356_12815 - peptidylprolyl isomerase, at 2,919,247 to 2,919,912
_12815
AO356_12820: AO356_12820 - transcriptional regulator, at 2,920,104 to 2,921,309
_12820
Group
Condition
AO356
_12800
AO356
_12805
AO356
_12810
AO356
_12815
AO356
_12820
stress
Sisomicin 0.001 mg/ml
-0.4
-0.6
-0.1
-0.3
-0.2
carbon source
D-Lactate (C)
-0.6
+0.1
-0.4
-0.2
-0.0
carbon source
acetate (C)
+0.1
+0.1
-0.3
-0.0
-1.0
stress
Benzalkonium Chloride 0.016 mg/ml
-1.0
-0.1
+0.2
-0.0
+0.1
survival
4C survival; 1152 hrs
-0.0
-0.2
-0.0
+0.2
-0.8
carbon source
L-Histidine (C)
-0.6
+0.0
+0.2
+0.1
-0.6
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.8
-0.2
+0.7
+0.1
-0.6
phage
P5ss-5 phage 10-1 dilution SM calcl2
-1.3
-0.1
+0.5
+0.4
-0.2
carbon source
D-Lactate (C)
-0.6
+0.1
-0.5
-0.1
+0.3
motility
outer cut, LB soft agar motility assay
-0.0
+0.2
+0.2
-0.0
-0.9
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.6
-0.2
+0.7
+0.1
-0.5
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.4
-0.1
+0.5
+0.0
-0.3
survival
4C survival; 360 hrs
-0.4
+0.1
+0.3
+0.2
-0.5
anaerobic
Nitrate reduction with yeast extract
-0.1
+0.2
+0.7
-0.0
-0.9
resistance
20 mM putrescine
-0.4
-0.2
+0.6
+0.2
-0.3
stress
Lomefloxacin 0.0005 mM
-0.5
-0.2
-0.1
-0.1
+0.7
nitrogen source
L-tyrosine (N)
-0.8
-0.0
+0.2
+0.2
+0.3
stress
Chlorite 0.08 mM
-0.2
-0.5
+0.7
+0.0
-0.1
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.4
-0.1
+0.7
+0.3
-0.5
carbon source
Ethanol (C)
+0.4
-0.2
-0.4
-0.1
+0.6
stress
Choline chloride 300 mM
-0.3
-0.2
+0.6
+0.0
+0.2
stress
Choline chloride 500 mM
-0.5
-0.3
+0.8
-0.1
+0.5
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.7
-0.2
+1.2
+0.3
-0.0
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.3
+0.0
+0.8
+0.3
-0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
-0.3
+0.9
-0.1
+0.1
carbon source
L-Lysine (C)
+0.0
-0.4
+0.6
+0.0
+0.7
carbon source
L-Lysine (C)
+0.1
-0.2
+0.6
-0.0
+0.6
carbon source
NAG (C)
+0.7
-0.1
+0.5
+0.1
+0.1
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.4
-0.3
+1.6
+0.4
+0.1
carbon source
D-Xylose (C)
+0.1
+0.1
+0.7
+0.2
+0.3
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