Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_12460 and AO356_12465 are separated by 136 nucleotidesAO356_12465 and AO356_12470 are separated by 266 nucleotidesAO356_12470 and AO356_12475 are separated by 55 nucleotidesAO356_12475 and AO356_12480 are separated by 35 nucleotides AO356_12460: AO356_12460 - hypothetical protein, at 2,846,380 to 2,846,610 _12460 AO356_12465: AO356_12465 - acyl-homoserine-lactone synthase, at 2,846,747 to 2,847,373 _12465 AO356_12470: AO356_12470 - hypothetical protein, at 2,847,640 to 2,848,380 _12470 AO356_12475: AO356_12475 - reactive intermediate/imine deaminase, at 2,848,436 to 2,848,816 _12475 AO356_12480: AO356_12480 - (p)ppGpp synthetase, at 2,848,852 to 2,850,957 _12480
Group Condition AO356_12460 AO356_12465 AO356_12470 AO356_12475 AO356_12480
carbon source D-Lactate (C) -0.3 +0.0 +0.1 -2.5 N.D.
carbon source D-Lactate (C) -0.3 -0.1 +0.2 -2.4 N.D.
stress Cobalt chloride 0.08 mM -0.3 +0.1 -0.1 -2.0 N.D.
carbon source L-Alanine (C) -0.1 +0.0 -0.1 -2.0 N.D.
carbon source L-Lactate (C) -0.2 +0.1 -0.1 -1.8 N.D.
stress Cobalt chloride 0.08 mM -0.2 +0.1 +0.0 -1.8 N.D.
carbon source D,L-Lactate (C) -0.4 -0.0 +0.1 -1.6 N.D.
carbon source L-Lactate (C) +0.1 +0.2 -0.2 -1.7 N.D.
nitrogen source Carnitine Hydrochloride (N) -0.0 +0.1 -0.1 -1.5 N.D.
stress Doxycycline hyclate 0.0001 mg/ml -0.4 -0.1 -0.6 -0.3 N.D.
carbon source L-Malic (C) -0.2 +0.1 -0.1 -1.1 N.D.
carbon source D,L-Lactate (C) +0.2 -0.0 -0.0 -1.4 N.D.
carbon source a-Ketoglutaric (C) +0.1 +0.1 -0.2 -1.3 N.D.
carbon source NAG (C) +0.1 -0.0 -0.3 -1.0 N.D.
stress Sisomicin 0.001 mg/ml -0.8 +0.1 +0.0 -0.6 N.D.
stress Bacitracin 2 mg/ml -0.2 -0.0 -0.4 -0.6 N.D.
carbon source Fumarate (C) -0.4 +0.0 +0.0 -0.8 N.D.
carbon source Fumarate (C) +0.0 +0.1 +0.0 -1.3 N.D.
nitrogen source Gly-Glu (N) +0.2 -0.0 -0.2 -1.0 N.D.
nitrogen source L-Phenylalanine (N) -0.3 +0.1 -0.0 -0.7 N.D.
nitrogen source nitrite (N) +0.2 -0.0 -0.2 -0.9 N.D.
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 -0.8 -0.2 -0.1 +0.3 N.D.
carbon source Carnitine Hydrochloride (C) +0.2 +0.0 +0.0 -1.1 N.D.
carbon source D-Mannose (C) -0.3 -0.1 +0.3 -0.6 N.D.
anaerobic Nitrate reduction with yeast extract -0.3 +0.1 +0.5 -0.9 N.D.
nitrogen source D-Alanine (N) +0.3 -0.0 -0.0 -0.9 N.D.
stress KB-half, Pseudo5 supernatant -0.7 -0.0 -0.1 +0.4 N.D.
pH Minimal media pH6 +0.3 +0.1 +0.2 -0.6 N.D.
stress copper (II) chloride 2.5 mM -0.4 +0.3 +0.4 +0.4 N.D.
nitrogen source D-Serine (N) +0.0 +0.1 -0.4 +1.0 N.D.
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