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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_12420 and AO356_12425 are separated by 15 nucleotides
AO356_12425 and AO356_12430 are separated by 2 nucleotides
AO356_12430 and AO356_12435 are separated by 11 nucleotides
AO356_12435 and AO356_12440 overlap by 4 nucleotides
AO356_12420: AO356_12420 - hypothetical protein, at 2,838,771 to 2,839,598
_12420
AO356_12425: AO356_12425 - hypothetical protein, at 2,839,614 to 2,840,357
_12425
AO356_12430: AO356_12430 - hypothetical protein, at 2,840,360 to 2,841,223
_12430
AO356_12435: AO356_12435 - hypothetical protein, at 2,841,235 to 2,842,623
_12435
AO356_12440: AO356_12440 - epimerase, at 2,842,620 to 2,843,432
_12440
Group
Condition
AO356
_12420
AO356
_12425
AO356
_12430
AO356
_12435
AO356
_12440
stress
Cisplatin 0.0032 mg/ml
-0.5
-0.0
-0.2
-0.2
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.2
-0.2
-0.1
-0.4
+0.1
stress
Nalidixic 0.004 mg/ml
-0.2
-0.3
-0.4
+0.1
+0.1
carbon source
Carbon source D-Mannitol 2.5 mM
-0.2
+0.1
-0.2
-0.4
+0.1
carbon source
Putrescine (C)
-0.4
-0.1
+0.2
-0.2
+0.1
stress
Chlorite 0.08 mM
-0.0
-0.1
-0.5
+0.2
+0.2
carbon source
Carbon source Sucrose 10 mM
+0.1
+0.1
+0.2
-0.5
+0.1
stress
nitrate 200 mM
+0.1
+0.2
+0.3
-0.3
-0.3
stress
Cephalothin 2 mg/ml
+0.3
-0.0
+0.2
-0.4
+0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.3
-0.3
-0.2
+0.5
+0.4
carbon source
L-Histidine (C)
-0.1
-0.2
-0.1
+0.6
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
+0.4
-0.2
+0.1
+0.0
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.2
+0.1
+0.3
+0.2
-0.1
motility
outer cut, LB soft agar motility assay
-0.2
+0.2
+0.3
-0.3
+0.3
carbon source
L-Arabinose (C)
+0.2
-0.0
+0.2
+0.3
-0.3
pH
Minimal media pH6
+0.3
-0.3
+0.1
+0.3
+0.1
stress
copper (II) chloride 2.5 mM
+0.4
-0.1
-0.0
+0.5
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
+0.1
+0.4
+0.4
+0.0
stress
Cisplatin 0.0032 mg/ml
-0.1
+0.2
-0.1
+0.5
+0.2
stress
syringaldehyde 5 mM
+0.2
+0.2
-0.2
+0.4
+0.2
carbon source
L-Glutamic (C)
+0.2
-0.1
+0.2
+0.3
+0.3
motility
outer cut, LB soft agar motility assay
+0.4
+0.3
-0.0
-0.1
+0.2
stress
methylglyoxal 0.016 vol%
+0.1
+0.2
-0.0
+0.4
+0.2
lb
LB
+0.3
+0.1
+0.0
+0.5
+0.1
carbon source
L-Glutamic (C)
+0.3
-0.0
+0.0
+0.4
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
+0.5
+0.3
+0.0
-0.2
anaerobic
Nitrate reduction with yeast extract
+0.4
-0.3
-0.1
+0.8
+0.2
motility
outer cut, LB soft agar motility assay
-0.1
-0.3
+0.4
+0.8
+0.1
stress
Sisomicin 0.001 mg/ml
+0.1
+0.4
+0.0
+0.6
+0.0
stress
KB-half, Pseudo5 supernatant
+0.5
+0.5
+0.4
+0.2
-0.1
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AO356_12430
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