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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_12230 and AO356_12235 are separated by 12 nucleotides
AO356_12235 and AO356_12240 are separated by 18 nucleotides
AO356_12240 and AO356_12245 are separated by 158 nucleotides
AO356_12245 and AO356_12250 overlap by 8 nucleotides
AO356_12230: AO356_12230 - type IV secretion protein Rhs, at 2,786,822 to 2,791,261
_12230
AO356_12235: AO356_12235 - hypothetical protein, at 2,791,274 to 2,791,708
_12235
AO356_12240: AO356_12240 - type VI secretion protein ImpA, at 2,791,727 to 2,793,664
_12240
AO356_12245: AO356_12245 - ClpV1 family T6SS ATPase, at 2,793,823 to 2,796,501
_12245
AO356_12250: AO356_12250 - type VI secretion protein, at 2,796,494 to 2,797,546
_12250
Group
Condition
AO356
_12230
AO356
_12235
AO356
_12240
AO356
_12245
AO356
_12250
motility
outer cut, LB soft agar motility assay
+0.0
-0.6
+0.0
-0.3
-0.4
stress
Cisplatin 0.0032 mg/ml
-0.0
-0.7
-0.1
-0.3
+0.0
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.0
-0.7
-0.0
-0.2
+0.0
carbon source
L-Lysine (C)
-0.0
-1.0
+0.1
-0.0
+0.1
resistance
20 mM putrescine
+0.0
-0.9
-0.0
-0.1
+0.1
carbon source
Carbon source D-Mannitol 2.5 mM
+0.1
-0.4
+0.0
-0.3
-0.1
carbon source
Carbon source D-Glucose 10 mM
+0.0
-0.8
-0.0
+0.1
-0.1
carbon source
Carbon source Sucrose 5 mM
+0.0
-0.7
+0.0
+0.1
+0.1
survival
4C survival; 1152 hrs
+0.0
+0.2
-0.2
-0.3
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.0
-0.5
+0.0
+0.2
-0.1
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.1
-0.7
+0.2
+0.0
+0.1
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.0
-0.5
+0.1
+0.2
+0.1
anaerobic
Nitrate reduction with yeast extract
+0.1
+0.3
-0.2
-0.4
+0.0
carbon source
NAG (C)
+0.1
+0.4
+0.1
-0.4
-0.0
stress
perchlorate 75 mM
-0.0
+0.6
+0.0
+0.1
-0.2
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.0
-0.2
+0.4
+0.0
+0.3
stress
nitrate 200 mM
+0.1
+0.7
+0.1
-0.3
+0.0
stress
methylglyoxal 0.016 vol%
+0.0
+0.6
-0.1
-0.2
+0.2
stress
Cephalothin 2 mg/ml
-0.0
+0.7
-0.0
+0.0
-0.1
carbon source
D-Glucose (C)
+0.0
+0.6
+0.0
-0.1
+0.2
stress
nitrite 10 mM
+0.0
+0.6
+0.1
+0.1
-0.1
stress
Chlorite 0.04 mM
-0.0
+0.4
+0.1
-0.0
+0.4
nitrogen source
D-Serine (N)
+0.1
+0.5
+0.3
-0.1
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.0
+0.8
+0.2
+0.1
-0.1
stress
Chloramphenicol 0.005 mg/ml
+0.0
+0.9
-0.0
-0.0
-0.0
motility
outer cut, LB soft agar motility assay
+0.2
+0.7
+0.3
-0.0
+0.1
stress
Paraquat dichloride 0.0625 mg/ml
+0.1
+0.3
+0.4
+0.2
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
+1.1
+0.1
-0.1
+0.1
stress
KB-half, Pseudo5 supernatant
+0.2
+0.7
+0.1
+0.5
+0.5
stress
Paraquat dichloride 0.0625 mg/ml
+0.1
+0.8
+0.4
+0.2
+0.4
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AO356_12240
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