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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_12020 and AO356_12025 are separated by 13 nucleotides
AO356_12025 and AO356_12030 are separated by 146 nucleotides
AO356_12030 and AO356_12035 are separated by 421 nucleotides
AO356_12035 and AO356_12040 overlap by 4 nucleotides
AO356_12020: AO356_12020 - pyruvate carboxylase subunit A, at 2,725,067 to 2,726,482
_12020
AO356_12025: AO356_12025 - pyruvate carboxylase subunit B, at 2,726,496 to 2,728,304
_12025
AO356_12030: AO356_12030 - autotransporter, at 2,728,451 to 2,730,571
_12030
AO356_12035: AO356_12035 - amino acid ABC transporter permease, at 2,730,993 to 2,731,826
_12035
AO356_12040: AO356_12040 - amino acid ABC transporter substrate-binding protein, at 2,731,823 to 2,732,644
_12040
Group
Condition
AO356
_12020
AO356
_12025
AO356
_12030
AO356
_12035
AO356
_12040
carbon source
NAG (C)
-5.9
-4.8
+0.1
-0.1
+0.0
pH
Minimal media pH8
-5.4
-4.5
+0.0
-0.3
+0.1
carbon source
L-Alanine (C)
-5.4
-4.7
+0.1
+0.2
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
-4.7
-4.8
+0.0
+0.0
-0.0
nitrogen source
nitrite (N)
-4.5
-4.9
+0.0
-0.0
+0.0
pH
Minimal media pH9
-4.8
-4.3
-0.1
-0.2
+0.1
carbon source
Carnitine Hydrochloride (C)
-5.0
-4.4
-0.0
+0.2
+0.0
pH
Minimal media pH8
-4.9
-4.4
-0.1
+0.1
+0.0
carbon source
pyruvate (C)
-5.2
-4.1
+0.1
+0.0
-0.0
pH
Minimal media pH6
-5.1
-3.9
+0.1
-0.1
-0.1
pH
Minimal media pH7
-4.9
-4.3
-0.0
-0.1
+0.0
carbon source
D-Alanine (C)
-5.1
-4.4
+0.0
+0.2
+0.0
carbon source
acetate (C)
-4.6
-4.5
+0.0
-0.1
+0.1
carbon source
L-Isoleucine (C)
-4.9
-4.1
+0.1
-0.1
+0.2
carbon source
D-Mannose (C)
-4.6
-4.4
+0.0
+0.0
-0.0
carbon source
acetate (C)
-4.5
-4.4
-0.1
+0.1
+0.0
pH
Minimal media pH6
-4.8
-4.1
-0.1
+0.0
+0.1
carbon source
L-Lysine (C)
-4.3
-4.0
+0.1
-0.2
-0.3
carbon source
m-Inositol (C)
-4.6
-4.1
+0.1
-0.0
-0.0
carbon source
pyruvate (C)
-4.7
-4.0
+0.0
-0.0
+0.1
carbon source
D-Lactate (C)
-4.4
-3.9
+0.0
-0.1
-0.0
carbon source
m-Inositol (C)
-4.7
-4.0
+0.1
+0.1
+0.0
pH
Minimal media pH7
-4.4
-3.8
-0.0
-0.0
-0.0
carbon source
D-Lactate (C)
-4.2
-3.8
-0.1
-0.1
+0.0
carbon source
Glycerol (C)
-4.3
-3.7
+0.0
-0.1
-0.0
carbon source
Uridine (C)
-4.4
-3.8
+0.0
-0.0
+0.2
nitrogen source
D-Alanine (N)
-4.2
-4.1
+0.1
+0.0
+0.2
carbon source
D-Fructose (C)
-4.6
-3.3
+0.1
+0.0
+0.0
carbon source
Glycerol (C)
-4.1
-3.8
+0.1
+0.0
-0.0
nitrogen source
Ammonium chloride (N)
-4.0
-3.7
-0.0
-0.1
+0.2
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