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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_11605 and AO356_11610 are separated by 80 nucleotides
AO356_11610 and AO356_11615 are separated by 190 nucleotides
AO356_11615 and AO356_11620 are separated by 233 nucleotides
AO356_11620 and AO356_11625 are separated by 128 nucleotides
AO356_11605: AO356_11605 - histidinol phosphatase, at 2,627,329 to 2,627,862
_11605
AO356_11610: AO356_11610 - glycerol acyltransferase, at 2,627,943 to 2,628,722
_11610
AO356_11615: AO356_11615 - histidine kinase, at 2,628,913 to 2,630,430
_11615
AO356_11620: AO356_11620 - transcriptional regulator, at 2,630,664 to 2,631,398
_11620
AO356_11625: AO356_11625 - GABA permease, at 2,631,527 to 2,632,921
_11625
Group
Condition
AO356
_11605
AO356
_11610
AO356
_11615
AO356
_11620
AO356
_11625
stress
Benzalkonium Chloride 0.016 mg/ml
N.D.
-3.8
-0.6
-0.4
+0.1
carbon source
L-Histidine (C)
N.D.
-3.2
-0.2
-0.2
+0.0
stress
syringaldehyde 10 mM
N.D.
-3.3
-0.2
-0.1
-0.0
carbon source
L-Histidine (C)
N.D.
-3.2
-0.1
-0.2
+0.0
carbon source
L-Lysine (C)
N.D.
-2.5
-0.2
-0.1
-0.7
carbon source
D-Alanine (C)
N.D.
-2.5
+0.1
-0.2
-0.8
survival
4C survival; 192 hrs
N.D.
-3.6
+0.2
+0.0
-0.0
stress
Sisomicin 0.001 mg/ml
N.D.
-2.8
-0.6
-0.0
+0.1
motility
outer cut, LB soft agar motility assay
N.D.
-3.1
+0.1
-0.1
-0.2
stress
syringaldehyde 5 mM
N.D.
-3.3
-0.0
+0.0
-0.0
carbon source
L-Proline (C)
N.D.
-1.6
-0.1
-0.2
-1.4
stress
Cholin acetate 20 mM
N.D.
-2.6
-0.4
-0.3
+0.1
carbon source
L-Proline (C)
N.D.
-1.6
-0.0
-0.2
-1.4
carbon source
m-Inositol (C)
N.D.
-3.2
-0.0
+0.1
-0.0
carbon source
Ethanol (C)
N.D.
-2.8
-0.0
-0.1
+0.1
carbon source
acetate (C)
N.D.
-3.0
+0.0
+0.1
+0.1
survival
4C survival; 672 hrs
N.D.
-2.9
+0.1
+0.1
-0.0
stress
Chlorite 0.04 mM
N.D.
-2.9
+0.3
+0.1
-0.1
stress
Chlorite 0.08 mM
N.D.
-3.0
+0.2
+0.3
-0.1
stress
Aluminum chloride 5 mM
N.D.
-2.8
-0.0
+0.0
+0.2
carbon source
m-Inositol (C)
N.D.
-2.8
+0.1
-0.1
+0.2
carbon source
L-Lactate (C)
N.D.
-2.8
+0.2
+0.1
+0.0
lb
LB
N.D.
-2.5
+0.3
+0.3
-0.2
stress
Spectinomycin 0.0125 mg/ml
N.D.
-2.7
+1.0
+1.0
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
N.D.
-1.3
+1.4
+1.5
-0.0
stress
Spectinomycin 0.025 mg/ml
N.D.
-2.1
+1.8
+1.9
+0.1
stress
Cobalt chloride 0.08 mM
N.D.
-1.7
+1.7
+1.8
+0.1
stress
Cobalt chloride 0.08 mM
N.D.
-2.0
+1.8
+2.0
+0.1
stress
Nickel (II) chloride 0.625 mM
N.D.
-1.2
+2.1
+2.2
+0.0
stress
Nickel (II) chloride 0.625 mM
N.D.
-0.3
+2.5
+2.7
-0.1
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