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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_11525 and AO356_11530 are separated by 93 nucleotides
AO356_11530 and AO356_11535 are separated by 640 nucleotides
AO356_11535 and AO356_11540 are separated by 228 nucleotides
AO356_11540 and AO356_11545 are separated by 150 nucleotides
AO356_11525: AO356_11525 - hypothetical protein, at 2,613,421 to 2,613,687
_11525
AO356_11530: AO356_11530 - hypothetical protein, at 2,613,781 to 2,614,140
_11530
AO356_11535: AO356_11535 - hypothetical protein, at 2,614,781 to 2,615,152
_11535
AO356_11540: AO356_11540 - glutathione S-transferase, at 2,615,381 to 2,616,076
_11540
AO356_11545: AO356_11545 - transcriptional regulator, at 2,616,227 to 2,616,790
_11545
Group
Condition
AO356
_11525
AO356
_11530
AO356
_11535
AO356
_11540
AO356
_11545
stress
Sisomicin 0.001 mg/ml
-0.4
-0.1
-0.1
-0.3
-0.6
stress
Doxycycline hyclate 0.0001 mg/ml
-0.6
-0.1
-0.0
-0.2
-0.2
nitrogen source
Uridine (N)
-0.2
-0.1
-0.2
-0.2
-0.4
survival
4C survival; 360 hrs
-0.1
-0.1
-0.1
-0.2
-0.5
stress
nitrate 200 mM
-0.6
+0.1
-0.0
-0.2
-0.2
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.3
+0.1
-0.1
-0.1
-0.4
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.1
+0.1
-0.3
-0.0
-0.5
carbon source
Glycerol (C)
-0.2
-0.2
-0.2
-0.1
-0.1
carbon source
L-Isoleucine (C)
-0.1
-0.1
-0.0
+0.0
-0.5
stress
Chlorite 0.04 mM
-0.1
-0.1
-0.2
-0.0
-0.3
stress
methylglyoxal 0.016 vol%
+0.1
-0.1
-0.5
-0.2
-0.2
pH
Minimal media pH9
-0.0
-0.0
-0.2
+0.0
-0.5
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.3
-0.2
-0.0
-0.1
-0.2
motility
outer cut, LB soft agar motility assay
-0.3
+0.1
-0.1
-0.1
-0.3
stress
D-Cycloserine 0.1 mg/ml
-0.1
-0.1
-0.2
-0.2
-0.2
nitrogen source
nitrite (N)
-0.2
-0.0
-0.1
-0.1
-0.3
nitrogen source
Adenosine (N)
-0.1
-0.1
-0.1
-0.2
-0.2
nitrogen source
Urea (N)
-0.1
+0.0
-0.2
-0.1
-0.3
stress
copper (II) chloride 2.5 mM
+0.1
+0.1
-0.5
-0.6
+0.1
survival
4C survival; 1152 hrs
-0.3
+0.1
-0.2
+0.0
-0.2
survival
4C survival; 672 hrs
+0.2
-0.0
-0.2
-0.1
-0.4
stress
Aluminum chloride 5 mM
-0.3
-0.1
-0.0
+0.2
-0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.4
-0.0
-0.2
+0.1
+0.2
carbon source
Carbon source D-Mannitol 5 mM
-0.3
-0.1
-0.0
+0.2
-0.2
carbon source
Putrescine (C)
+0.2
+0.0
-0.1
-0.2
-0.2
carbon source
D-Glucose (C)
+0.2
+0.0
+0.2
-0.4
+0.0
stress
Cholin acetate 40 mM
+0.4
-0.2
-0.1
+0.0
-0.1
temperature
LB 37C
+0.2
-0.1
-0.2
+0.2
-0.2
stress
Chlorite 0.08 mM
-0.0
-0.3
-0.1
+0.4
+0.1
carbon source
L-Histidine (C)
+0.1
-0.1
-0.1
+0.1
+0.3
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