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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_11390 and AO356_11395 are separated by 5 nucleotides
AO356_11395 and AO356_11400 are separated by 315 nucleotides
AO356_11400 and AO356_11405 are separated by 702 nucleotides
AO356_11405 and AO356_11410 are separated by 247 nucleotides
AO356_11390: AO356_11390 - ABC transporter, at 2,582,441 to 2,583,073
_11390
AO356_11395: AO356_11395 - hypothetical protein, at 2,583,079 to 2,584,308
_11395
AO356_11400: AO356_11400 - glutamate:protein symporter, at 2,584,624 to 2,585,955
_11400
AO356_11405: AO356_11405 - hypothetical protein, at 2,586,658 to 2,587,122
_11405
AO356_11410: AO356_11410 - hypothetical protein, at 2,587,370 to 2,587,654
_11410
Group
Condition
AO356
_11390
AO356
_11395
AO356
_11400
AO356
_11405
AO356
_11410
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.7
+0.0
-0.5
+0.3
-3.8
carbon source
D-Glucosamine Hydrochloride (C)
+0.0
-0.2
-1.0
-0.4
-1.2
anaerobic
Nitrate reduction with yeast extract
-0.7
-0.4
+0.7
-0.3
-2.0
stress
Chlorite 0.04 mM
+0.0
-0.2
-1.7
+0.2
-0.7
stress
Benzethonium chloride 0.025 mM
-0.1
-0.6
+0.0
-0.4
-1.1
motility
outer cut, LB soft agar motility assay
-0.4
-0.4
-1.2
-0.2
+0.2
carbon source
L-Histidine (C)
-0.3
-0.2
-0.0
+0.2
-1.4
stress
Chlorite 0.08 mM
+0.2
-0.1
-1.2
+0.3
-1.0
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.4
-0.6
-0.5
-0.2
-0.5
stress
Ceftazidime 0.2 mg/ml
-0.2
-1.3
+0.0
+0.2
+0.3
stress
syringaldehyde 5 mM
-0.2
-0.4
-0.6
-0.6
+1.0
carbon source
Uridine (C)
+0.1
+0.1
+0.4
-0.2
-1.2
stress
Benzalkonium Chloride 0.008 mg/ml
+0.3
-1.3
+0.1
-0.1
+0.4
stress
Fusidic 0.1 mg/ml
+0.3
-0.6
+0.3
+0.1
-0.7
carbon source
acetate (C)
+0.2
-1.9
+1.4
+0.1
-0.1
carbon source
acetate (C)
+0.2
-1.5
+1.3
+0.1
-0.3
stress
Sisomicin 0.001 mg/ml
-0.0
-0.3
+0.9
-0.4
-0.5
carbon source
D-Xylose (C)
+0.3
-0.2
+0.7
-0.2
-0.7
stress
Benzalkonium Chloride 0.016 mg/ml
-0.0
-1.6
+0.5
+0.3
+0.9
stress
Doxycycline hyclate 0.0001 mg/ml
+0.1
-1.0
+0.6
+0.2
+0.3
stress
Rifampicin 0.0024 mg/ml
+0.2
-0.9
+1.0
-0.0
+0.1
survival
4C survival; 1152 hrs
+0.1
-0.6
-0.0
-0.0
+1.5
motility
outer cut, LB soft agar motility assay
+0.3
-0.2
-0.8
+0.2
+1.5
carbon source
Carbon source D-Mannitol 2.5 mM
-0.1
+1.1
+0.4
+0.1
-0.3
carbon source
L-Lysine (C)
-0.4
+0.9
+0.6
-0.1
+0.4
carbon source
Carbon source D-Mannitol 5 mM
-0.1
+1.5
+0.3
-0.0
-0.1
stress
Cobalt chloride 0.08 mM
+0.4
-0.3
+1.3
+0.1
+0.4
stress
copper (II) chloride 2.5 mM
+0.2
+0.1
+0.3
+0.5
+1.0
carbon source
L-Lysine (C)
-0.3
+1.0
+0.9
+0.2
+0.5
carbon source
Carbon source Sucrose 2.5 mM
+0.0
+1.6
+0.3
+0.1
+0.3
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