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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_11155 and AO356_11160 are separated by 373 nucleotides
AO356_11160 and AO356_11165 are separated by 82 nucleotides
AO356_11165 and AO356_11170 are separated by 121 nucleotides
AO356_11170 and AO356_11175 are separated by 24 nucleotides
AO356_11155: AO356_11155 - hypothetical protein, at 2,534,391 to 2,535,041
_11155
AO356_11160: AO356_11160 - cytochrome B559 subunit alpha, at 2,535,415 to 2,536,542
_11160
AO356_11165: AO356_11165 - cytochrome oxidase subunit I, at 2,536,625 to 2,538,217
_11165
AO356_11170: AO356_11170 - cysteine synthase, at 2,538,339 to 2,538,890
_11170
AO356_11175: AO356_11175 - MFS transporter, at 2,538,915 to 2,539,802
_11175
Group
Condition
AO356
_11155
AO356
_11160
AO356
_11165
AO356
_11170
AO356
_11175
carbon source
L-Lysine (C)
-0.3
-0.9
-0.9
-1.1
-0.8
carbon source
L-Lysine (C)
-0.1
-0.5
-0.7
-0.9
-0.6
carbon source
acetate (C)
+0.8
-1.2
-0.7
-0.6
-0.6
carbon source
L-Aspartic Acid (C)
-0.1
-0.3
-0.4
-0.8
-0.5
carbon source
D-Trehalose (C)
-0.0
-0.5
-0.4
-0.5
-0.6
carbon source
D-Trehalose (C)
+0.1
-0.5
-0.5
-0.5
-0.7
carbon source
acetate (C)
+0.8
-1.1
-0.7
-0.8
-0.4
carbon source
L-Aspartic Acid (C)
-0.2
-0.4
-0.3
-0.4
-0.5
carbon source
Ethanol (C)
+0.2
-0.5
-0.3
-0.5
-0.5
carbon source
NAG (C)
-1.1
-0.2
-0.1
+0.1
-0.2
carbon source
Ethanol (C)
+0.4
-0.4
-0.4
-0.4
-0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.4
-0.2
-0.1
-0.1
-0.3
carbon source
Fumarate (C)
-1.1
+0.0
-0.2
+0.1
+0.0
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.2
-0.3
-0.1
-0.4
-0.3
carbon source
L-Asparagine (C)
-1.2
+0.3
+0.1
-0.2
+0.1
carbon source
L-Glutamine (C)
-0.8
+0.1
+0.0
-0.2
+0.0
carbon source
L-Proline (C)
-0.7
+0.2
+0.1
-0.2
-0.1
carbon source
D-Alanine (C)
-0.8
+0.3
-0.0
-0.1
-0.0
carbon source
Putrescine (C)
-0.6
-0.1
-0.2
+0.2
+0.1
carbon source
L-Asparagine (C)
-1.2
+0.4
+0.1
+0.1
+0.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.7
+0.3
-0.0
-0.1
+0.0
carbon source
D-Xylose (C)
-0.8
+0.0
+0.1
+0.0
+0.3
survival
4C survival; 1152 hrs
-0.5
+0.2
+0.1
+0.1
-0.2
carbon source
L-Histidine (C)
-1.6
+0.6
+0.3
+0.0
+0.4
carbon source
D-Xylose (C)
-0.7
+0.1
+0.1
+0.1
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.6
-0.1
+0.0
+0.4
+0.1
carbon source
L-Histidine (C)
-1.6
+0.7
+0.3
+0.0
+0.5
stress
Cobalt chloride 0.08 mM
+0.7
-0.3
-0.1
+0.1
-0.1
anaerobic
Nitrate reduction with yeast extract
-0.7
+0.4
+0.1
+0.4
+0.1
stress
Cobalt chloride 0.08 mM
+0.7
-0.2
+0.0
+0.3
+0.1
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