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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_11020 and AO356_11025 are separated by 169 nucleotides
AO356_11025 and AO356_11030 are separated by 97 nucleotides
AO356_11030 and AO356_11035 are separated by 156 nucleotides
AO356_11035 and AO356_11040 are separated by 15 nucleotides
AO356_11020: AO356_11020 - chemotaxis protein CheY, at 2,502,553 to 2,503,506
_11020
AO356_11025: AO356_11025 - transcriptional regulator PhoU, at 2,503,676 to 2,504,437
_11025
AO356_11030: AO356_11030 - phosphate ABC transporter ATP-binding protein, at 2,504,535 to 2,505,368
_11030
AO356_11035: AO356_11035 - phosphate ABC transporter permease, at 2,505,525 to 2,507,195
_11035
AO356_11040: AO356_11040 - phosphate ABC transporter permease, at 2,507,211 to 2,509,496
_11040
Group
Condition
AO356
_11020
AO356
_11025
AO356
_11030
AO356
_11035
AO356
_11040
carbon source
D-Xylose (C)
-0.3
-2.2
-3.2
-3.4
-2.8
stress
Cisplatin 0.0032 mg/ml
-0.4
-2.2
-3.3
-2.7
-3.1
carbon source
D-Xylose (C)
-0.1
-2.2
-3.1
-2.5
-2.7
stress
Cisplatin 0.0032 mg/ml
-0.1
-2.1
-2.7
-2.0
-2.9
carbon source
D-Ribose (C)
-0.3
-1.8
-2.8
-1.7
-2.0
stress
Aluminum chloride 5 mM
-0.2
-2.2
-2.1
-1.6
-1.9
carbon source
D-Ribose (C)
+0.2
-1.8
-2.4
-2.2
-1.9
carbon source
D-Lactate (C)
+0.1
-2.5
-2.3
-1.4
-1.7
temperature
LB 10C
-0.1
-3.0
-2.1
-1.1
-1.5
stress
Nalidixic 0.004 mg/ml
-0.0
-2.8
-2.2
-1.0
-1.4
carbon source
D-Lactate (C)
-0.3
-2.4
-2.0
-1.1
-1.5
stress
Cholin acetate 40 mM
+0.3
-3.6
-1.5
-1.1
-1.2
stress
copper (II) chloride 2.5 mM
-0.4
-1.4
-2.1
-1.2
-1.8
temperature
LB 10C
-0.1
-2.4
-1.9
-0.9
-1.5
survival
4C survival; 1152 hrs
-0.4
-2.4
-1.7
-0.8
-1.5
stress
perchlorate 75 mM
-0.0
-2.0
-1.6
-1.2
-1.8
stress
Lomefloxacin 0.0005 mM
+0.0
-2.7
-1.8
-0.5
-1.6
stress
methylglyoxal 0.016 vol%
-0.8
-1.7
-1.6
-0.7
-1.1
carbon source
Carbon source D-Mannitol 10 mM
-0.1
-2.6
+1.1
+0.6
+0.9
motility
outer cut, LB soft agar motility assay
+0.0
-2.4
+1.0
+0.8
+1.0
carbon source
Carbon source D-Mannitol 5 mM
-0.1
-2.4
+1.4
+0.9
+1.2
carbon source
Carbon source Sucrose 2.5 mM
+0.2
-2.2
+1.4
+0.7
+1.2
carbon source
Carbon source Sucrose 5 mM
-0.1
-2.3
+1.9
+1.3
+1.6
motility
outer cut, LB soft agar motility assay
+0.3
-0.9
+1.8
+1.5
+1.6
carbon source
Carbon source Sucrose 10 mM
-0.7
-1.8
+2.6
+2.0
+2.4
carbon source
D-Gluconic Acid (C)
-0.4
+1.0
+1.4
+1.2
+1.5
carbon source
Carbon source Sucrose 5 mM
+0.1
-2.2
+2.7
+1.9
+2.4
carbon source
D-Gluconic Acid (C)
-0.2
+1.1
+1.9
+1.6
+2.0
carbon source
Carbon source Sucrose 10 mM
-0.0
-1.9
+3.4
+2.4
+3.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.4
+2.4
+3.1
+2.9
+3.1
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