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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_11005 and AO356_11010 are separated by 113 nucleotides
AO356_11010 and AO356_11015 are separated by 270 nucleotides
AO356_11015 and AO356_11020 are separated by 219 nucleotides
AO356_11020 and AO356_11025 are separated by 169 nucleotides
AO356_11005: AO356_11005 - histidine kinase, at 2,498,390 to 2,499,712
_11005
AO356_11010: AO356_11010 - hypothetical protein, at 2,499,826 to 2,501,166
_11010
AO356_11015: AO356_11015 - peptidase M23, at 2,501,437 to 2,502,333
_11015
AO356_11020: AO356_11020 - chemotaxis protein CheY, at 2,502,553 to 2,503,506
_11020
AO356_11025: AO356_11025 - transcriptional regulator PhoU, at 2,503,676 to 2,504,437
_11025
Group
Condition
AO356
_11005
AO356
_11010
AO356
_11015
AO356
_11020
AO356
_11025
carbon source
acetate (C)
-0.7
-3.0
-0.0
-0.5
-2.7
carbon source
acetate (C)
-0.5
-3.0
+0.1
-0.2
-2.4
carbon source
D-Xylose (C)
-2.2
-0.0
-0.1
-0.3
-2.2
carbon source
D-Xylose (C)
-2.1
+0.0
+0.1
-0.1
-2.2
carbon source
Uridine (C)
-0.4
+0.3
-0.2
-0.1
-3.1
carbon source
Carnitine Hydrochloride (C)
-0.3
-0.2
-0.1
-0.2
-2.8
stress
Nalidixic 0.004 mg/ml
-0.0
-0.5
-0.1
-0.0
-2.8
anaerobic
Nitrate reduction with yeast extract
-0.1
-0.3
+0.2
-0.4
-2.8
carbon source
L-Histidine (C)
-1.3
+0.9
+0.0
-0.4
-2.5
stress
Cholin acetate 40 mM
-0.1
-0.1
+0.1
+0.3
-3.6
stress
Chlorite 0.04 mM
-0.3
+0.3
-0.1
-0.4
-2.8
carbon source
Cytidine (C)
-0.5
+0.2
-0.0
+0.0
-2.8
carbon source
D-Ribose (C)
-1.4
+0.5
-0.1
-0.3
-1.8
carbon source
L-Arginine (C)
-0.1
+0.1
+0.0
+0.1
-3.1
carbon source
D-Ribose (C)
-1.7
+0.3
+0.0
+0.2
-1.8
carbon source
L-Histidine (C)
-1.4
+0.8
-0.1
+0.1
-2.3
carbon source
D-Lactate (C)
-1.2
+0.9
+0.2
-0.3
-2.4
carbon source
Putrescine (C)
-0.3
+0.5
-0.2
-0.2
-2.4
carbon source
L-Lysine (C)
-1.1
+1.2
+0.1
-0.5
-2.1
carbon source
L-Lysine (C)
-1.1
+1.1
+0.1
-0.5
-1.9
carbon source
D-Lactate (C)
-0.8
+1.0
+0.2
+0.1
-2.5
stress
Cisplatin 0.0032 mg/ml
-0.2
+2.9
+0.3
-0.4
-2.2
stress
Cisplatin 0.0032 mg/ml
-0.1
+2.9
+0.2
-0.1
-2.1
stress
Cobalt chloride 0.08 mM
-0.0
+3.5
+0.1
-0.5
-1.3
stress
Nickel (II) chloride 0.625 mM
-0.2
+4.0
+0.1
+0.1
-1.5
stress
Nickel (II) chloride 0.625 mM
+0.0
+4.0
+0.2
-0.4
-1.2
carbon source
D-Gluconic Acid (C)
+1.2
+0.9
-0.0
-0.4
+1.0
stress
Cobalt chloride 0.08 mM
+0.1
+3.6
+0.2
+0.2
-1.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.8
-0.2
-0.3
+0.4
+2.4
carbon source
D-Gluconic Acid (C)
+1.7
+0.9
-0.0
-0.2
+1.1
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