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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_10985 and AO356_10990 overlap by 1 nucleotides
AO356_10990 and AO356_10995 are separated by 152 nucleotides
AO356_10995 and AO356_11000 are separated by 152 nucleotides
AO356_11000 and AO356_11005 are separated by 44 nucleotides
AO356_10985: AO356_10985 - chorismate--pyruvate lyase, at 2,495,517 to 2,496,080
_10985
AO356_10990: AO356_10990 - 4-hydroxybenzoate octaprenyltransferase, at 2,496,080 to 2,496,970
_10990
AO356_10995: AO356_10995 - hypothetical protein, at 2,497,123 to 2,497,503
_10995
AO356_11000: AO356_11000 - phosphate regulon transcriptional regulatory protein PhoB, at 2,497,656 to 2,498,345
_11000
AO356_11005: AO356_11005 - histidine kinase, at 2,498,390 to 2,499,712
_11005
Group
Condition
AO356
_10985
AO356
_10990
AO356
_10995
AO356
_11000
AO356
_11005
carbon source
L-Histidine (C)
-1.0
N.D.
-0.2
-0.3
-1.4
carbon source
D-Lactate (C)
-1.6
N.D.
+0.1
-0.0
-1.2
carbon source
L-Histidine (C)
-0.9
N.D.
-0.2
+0.1
-1.3
carbon source
D-Lactate (C)
-1.3
N.D.
+0.0
-0.0
-0.8
carbon source
L-Lysine (C)
-0.7
N.D.
-0.1
-0.1
-1.1
carbon source
D-Xylose (C)
-0.1
N.D.
+0.0
+0.4
-2.2
carbon source
D-Xylose (C)
-0.0
N.D.
+0.1
+0.4
-2.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.6
N.D.
-0.1
-0.9
+0.1
carbon source
L-Alanine (C)
-1.1
N.D.
-0.0
-0.0
-0.4
carbon source
D-Ribose (C)
-0.1
N.D.
+0.0
+0.3
-1.7
carbon source
L-Proline (C)
-1.2
N.D.
-0.0
-0.1
-0.2
carbon source
L-Lysine (C)
-0.3
N.D.
+0.2
-0.1
-1.1
carbon source
acetate (C)
-1.1
N.D.
+0.1
+0.4
-0.7
carbon source
D-Ribose (C)
+0.1
N.D.
-0.1
+0.1
-1.4
stress
copper (II) chloride 2.5 mM
-1.0
N.D.
-0.2
-0.1
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.9
N.D.
-0.0
-0.1
-0.2
carbon source
acetate (C)
-0.8
N.D.
+0.0
+0.3
-0.5
nitrogen source
D-Serine (N)
+0.4
N.D.
-0.0
-0.7
-0.5
carbon source
NAG (C)
-0.1
N.D.
+0.1
+0.1
-0.9
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.3
N.D.
+0.2
-0.2
-0.4
stress
Choline chloride 500 mM
-0.9
N.D.
-0.2
+0.4
+0.5
carbon source
D-Trehalose (C)
-0.1
N.D.
+0.0
+0.6
-0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.1
N.D.
+0.1
-0.5
+0.8
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.8
N.D.
+0.0
-0.1
-0.4
stress
Sisomicin 0.001 mg/ml
+0.7
N.D.
+0.2
-0.3
+0.0
carbon source
Ethanol (C)
-0.3
N.D.
+0.0
+0.2
+0.9
nitrogen source
Ammonium chloride (N)
+0.3
N.D.
+0.1
-0.1
+0.7
carbon source
D-Gluconic Acid (C)
+0.1
N.D.
-0.2
-0.1
+1.2
stress
Rifampicin 0.0024 mg/ml
+1.5
N.D.
+0.1
-0.3
+0.0
carbon source
D-Gluconic Acid (C)
+0.2
N.D.
+0.1
-0.0
+1.7
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