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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_10955 and AO356_10960 are separated by 40 nucleotides
AO356_10960 and AO356_10965 are separated by 57 nucleotides
AO356_10965 and AO356_10970 are separated by 277 nucleotides
AO356_10970 and AO356_10975 are separated by 191 nucleotides
AO356_10955: AO356_10955 - hypothetical protein, at 2,491,227 to 2,491,652
_10955
AO356_10960: AO356_10960 - hypothetical protein, at 2,491,693 to 2,492,106
_10960
AO356_10965: AO356_10965 - aminopeptidase, at 2,492,164 to 2,493,255
_10965
AO356_10970: AO356_10970 - integration host factor, at 2,493,533 to 2,493,808
_10970
AO356_10975: AO356_10975 - pyridine nucleotide-disulfide oxidoreductase, at 2,494,000 to 2,495,148
_10975
Group
Condition
AO356
_10955
AO356
_10960
AO356
_10965
AO356
_10970
AO356
_10975
stress
Fusidic 0.1 mg/ml
-0.8
-0.4
-0.1
N.D.
-0.0
motility
outer cut, LB soft agar motility assay
-0.3
-0.4
+0.1
N.D.
-0.1
motility
outer cut, LB soft agar motility assay
-0.2
-0.6
+0.2
N.D.
-0.0
lb
LB
+0.0
-0.6
-0.0
N.D.
+0.1
nitrogen source
D-Serine (N)
-0.2
-0.2
+0.1
N.D.
-0.1
stress
Chlorite 0.04 mM
-0.1
-0.4
+0.2
N.D.
-0.0
stress
Benzalkonium Chloride 0.016 mg/ml
-0.0
-0.6
+0.1
N.D.
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
+0.2
-0.1
N.D.
-0.4
carbon source
Putrescine (C)
+0.1
-0.2
-0.2
N.D.
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.3
-0.2
-0.3
N.D.
-0.0
stress
Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.3
-0.1
N.D.
+0.3
stress
Benzethonium chloride 0.025 mM
+0.2
-0.4
+0.1
N.D.
-0.0
carbon source
Carbon source Sucrose 2.5 mM
+0.2
-0.3
+0.1
N.D.
+0.1
stress
nitrite 10 mM
+0.3
-0.2
-0.0
N.D.
-0.1
stress
Rifampicin 0.0016 mg/ml
+0.2
-0.3
+0.0
N.D.
+0.1
carbon source
D-Xylose (C)
-0.2
+0.3
+0.0
N.D.
-0.1
stress
Cobalt chloride 0.08 mM
-0.4
+0.3
+0.1
N.D.
-0.0
stress
Spectinomycin 0.0125 mg/ml
+0.2
-0.3
+0.1
N.D.
+0.0
carbon source
D-Galactose (C)
-0.2
+0.4
-0.1
N.D.
-0.1
carbon source
Carnitine Hydrochloride (C)
-0.1
+0.4
-0.0
N.D.
-0.1
stress
Benzalkonium Chloride 0.008 mg/ml
+0.3
-0.2
+0.1
N.D.
+0.0
motility
outer cut, LB soft agar motility assay
-0.2
+0.2
+0.3
N.D.
-0.1
stress
Nalidixic 0.004 mg/ml
+0.2
-0.2
+0.2
N.D.
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.4
+0.4
-0.2
N.D.
+0.5
stress
methylglyoxal 0.016 vol%
+0.2
-0.1
-0.0
N.D.
+0.4
stress
Aluminum chloride 5 mM
+0.2
-0.2
+0.1
N.D.
+0.4
stress
KB-half, Pseudo5 supernatant
-0.1
+0.4
-0.2
N.D.
+0.5
carbon source
m-Inositol (C)
+0.1
+0.6
+0.1
N.D.
+0.0
stress
copper (II) chloride 2.5 mM
+0.1
+0.5
-0.2
N.D.
+0.4
stress
Lomefloxacin 0.0005 mM
+0.1
+0.4
-0.0
N.D.
+0.3
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