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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_10740 and AO356_10745 are separated by 177 nucleotides
AO356_10745 and AO356_10750 are separated by 208 nucleotides
AO356_10750 and AO356_10755 are separated by 10 nucleotides
AO356_10755 and AO356_10760 are separated by 114 nucleotides
AO356_10740: AO356_10740 - RNA polymerase subunit sigma, at 2,447,281 to 2,447,853
_10740
AO356_10745: AO356_10745 - hypothetical protein, at 2,448,031 to 2,449,707
_10745
AO356_10750: AO356_10750 - hypothetical protein, at 2,449,916 to 2,450,527
_10750
AO356_10755: AO356_10755 - hypothetical protein, at 2,450,538 to 2,451,125
_10755
AO356_10760: AO356_10760 - quinone oxidoreductase, at 2,451,240 to 2,452,268
_10760
Group
Condition
AO356
_10740
AO356
_10745
AO356
_10750
AO356
_10755
AO356
_10760
stress
nitrate 200 mM
-0.1
-0.1
-0.1
-0.6
-0.2
stress
acetate 40 mM
-0.3
-0.2
-0.1
-0.5
-0.0
survival
4C survival; 360 hrs
-0.0
-0.1
+0.0
-1.0
+0.0
stress
syringaldehyde 5 mM
-0.1
-0.1
-0.1
-0.9
+0.2
carbon source
D-Xylose (C)
-0.2
-0.1
-0.1
-0.6
-0.0
stress
Benzalkonium Chloride 0.016 mg/ml
-0.2
+0.1
-0.1
-0.8
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
+0.0
-0.1
-0.1
-0.6
-0.1
carbon source
D-Lactate (C)
-0.3
+0.1
+0.0
-0.6
+0.1
carbon source
casaminos (C)
-0.3
-0.0
-0.1
-0.4
+0.1
stress
Paraquat dichloride 0.0625 mg/ml
-0.4
-0.0
+0.1
-0.2
-0.1
stress
Chloramphenicol 0.005 mg/ml
+0.2
+0.0
-0.1
-0.6
-0.0
stress
nitrite 10 mM
+0.0
+0.2
+0.1
-0.8
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
+0.1
+0.1
-0.5
+0.0
motility
outer cut, LB soft agar motility assay
+0.2
-0.1
+0.2
-0.6
-0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
-0.1
+0.1
-0.9
+0.4
motility
outer cut, LB soft agar motility assay
+0.7
+0.1
-0.3
-0.7
-0.1
pH
Minimal media pH7
-0.2
+0.0
+0.2
-0.4
+0.1
carbon source
L-Glutamine (C)
+0.2
+0.1
+0.0
-0.5
-0.0
stress
sodium fluoride 6.25 mM
-0.3
+0.0
-0.1
+0.4
-0.1
anaerobic
Nitrate reduction with yeast extract
+0.3
-0.1
+0.2
-0.4
+0.0
carbon source
NAG (C)
-0.1
-0.0
-0.1
+0.5
-0.1
carbon source
L-Lysine (C)
+0.4
+0.1
-0.1
-0.2
+0.0
motility
outer cut, LB soft agar motility assay
+0.3
+0.2
+0.0
+0.5
-0.5
stress
Chlorite 0.04 mM
+0.6
-0.0
-0.2
+0.2
+0.1
stress
copper (II) chloride 2.5 mM
+0.1
-0.1
+0.1
+0.9
-0.2
stress
Benzalkonium Chloride 0.008 mg/ml
+0.1
-0.0
-0.0
+0.8
-0.0
stress
KB-half, Pseudo5 supernatant
+0.4
+0.2
+0.2
-0.1
+0.3
carbon source
L-Lysine (C)
+0.2
+0.0
+0.2
+0.5
-0.1
stress
Chlorite 0.08 mM
+0.2
+0.1
-0.0
+0.9
-0.0
stress
Rifampicin 0.0016 mg/ml
+0.2
+0.2
+0.1
+0.7
+0.0
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